Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H13
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.1  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   4.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   4.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   7.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +3

Query: 87  IAEPGRYFAAAAYTLATMI------YAKREVVGKDSEGEDEMH 197
           +A P  + A++A  LA  +      + +R   G  S G+DE+H
Sbjct: 513 VAPPSGHHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDELH 555


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 50  CRVDHLRHLTKARVPR 3
           CR+ +LR+  K  VPR
Sbjct: 73  CRLGYLRNKKKVCVPR 88


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 50  CRVDHLRHLTKARVPR 3
           CR+ +LR+  K  VPR
Sbjct: 73  CRLGYLRNKKKVCVPR 88


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 134 GEGVCRGGEVPARFSDDAHAALRE 63
           G    RGG++P R++     A R+
Sbjct: 791 GAYTTRGGKIPVRWTAPEAIAFRK 814


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,614
Number of Sequences: 438
Number of extensions: 1194
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)