Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H13
(299 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35010.1 68417.m04965 glycosyl hydrolase family 35 protein si... 29 0.44
At2g04680.1 68415.m00478 DC1 domain-containing protein contains ... 27 1.8
At1g07470.1 68414.m00797 transcription factor IIA large subunit,... 27 2.3
At4g17650.1 68417.m02638 aromatic-rich family protein contains P... 27 3.1
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ... 27 3.1
At3g11590.1 68416.m01416 expressed protein 27 3.1
At5g43610.1 68418.m05331 sucrose transporter-related / sucrose-p... 26 4.1
At2g14670.1 68415.m01650 sucrose transporter, putative / sucrose... 26 4.1
At1g66570.1 68414.m07564 sucrose transporter, putative / sucrose... 26 4.1
At1g07480.2 68414.m00801 transcription factor IIA large subunit ... 26 4.1
At1g07480.1 68414.m00800 transcription factor IIA large subunit ... 26 4.1
At5g23550.1 68418.m02764 expressed protein 26 5.4
At5g22355.1 68418.m02608 DC1 domain-containing protein contains ... 26 5.4
At5g11800.1 68418.m01377 K+ efflux antiporter, putative (KEA6) M... 26 5.4
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 26 5.4
At4g03550.1 68417.m00486 glycosyl transferase family 48 protein ... 26 5.4
At5g06170.1 68418.m00688 sucrose transporter, putative / sucrose... 25 7.1
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ... 25 7.1
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ... 25 9.4
>At4g35010.1 68417.m04965 glycosyl hydrolase family 35 protein
similar to beta-galactosidase BG1 GI:15081596 from
[Vitis vinifera]
Length = 845
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 161 HLSFGVYHGGEGVCRGGE--VPARFSDDAHAALREVHFECRVDHLRHLTKA 15
H+++ +YHGG R V R+ DDA + E + HL+HL A
Sbjct: 303 HVNYYMYHGGTNFGRTSAHYVTTRYYDDAPLDEYGLEKEPKYGHLKHLHNA 353
>At2g04680.1 68415.m00478 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 169 RTARGRMRCTRCTSYNDGVYGSFNCI 246
R G +C C DG YG++ C+
Sbjct: 306 RLGHGEWKCKVCRKKVDGFYGAYTCL 331
>At1g07470.1 68414.m00797 transcription factor IIA large subunit,
putative / TFIIA large subunit, putative nearly
identical to transcription factor IIA large subunit
GI:2826884 from [Arabidopsis thaliana]; contains Pfam
profile: PF03153 transcription factor IIA, alpha/beta
subunit
Length = 375
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 116 GGEVPARFSDDAHAALREVHFECRVDHLRHLTKARVPR 3
GG +P + D A A+ E +FEC + ++ ++PR
Sbjct: 205 GGSIPQQ--DGASDAIPEANFECAALRITYVGDRKIPR 240
>At4g17650.1 68417.m02638 aromatic-rich family protein contains Pfam
PF03654: Aromatic-Rich Protein Family
Length = 256
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 215 LYEVHRVHLILPLAVLTHHLSFGVYHGGEGVCRGGEVPARFSDDAHAALREVHFECRVD- 39
+YE RV P + + +YHG C+ EV + D + A E+ F+ V+
Sbjct: 99 IYEERRVLGYTPEQMFNVVAAVDLYHGFVPWCQRSEVLKEYPDGSFDAELEIGFKFLVES 158
Query: 38 HLRHLTKAR 12
++ H+ R
Sbjct: 159 YISHVESER 167
>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 686
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 178 RGRMRCTRCTSYNDGVYGSFNC 243
+G ++C C DG YG+++C
Sbjct: 314 QGNLKCGVCRKTVDGFYGAYSC 335
>At3g11590.1 68416.m01416 expressed protein
Length = 622
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 170 LTHHLSFGVYHGGEGVCRGGEVPARFSDDAHA 75
L HH+SFG Y+ +G G D H+
Sbjct: 468 LNHHISFGSYNIEDGEVENGNEEGSGESDLHS 499
>At5g43610.1 68418.m05331 sucrose transporter-related /
sucrose-proton symporter-related similar to
sucrose-proton symporter SUC1 [Arabidopsis thaliana]
GI:407094, sucrose transporter [Arabidopsis thaliana]
GI:12057172; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 492
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 153 REVVGKDSEGEDEMHTMY 206
REV G DS+G+D+M +Y
Sbjct: 305 REVYGGDSKGDDKMKKLY 322
>At2g14670.1 68415.m01650 sucrose transporter, putative /
sucrose-proton symporter, putative similar to
sucrose-proton symporter SUC1 [Arabidopsis thaliana]
GI:407094, SUC2 [Arabidopsis thaliana] GI:407092,
sucrose transporter [Arabidopsis thaliana] GI:12057172;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 492
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 153 REVVGKDSEGEDEMHTMY 206
REV G DS+G+D+M +Y
Sbjct: 305 REVYGGDSKGDDKMKKLY 322
>At1g66570.1 68414.m07564 sucrose transporter, putative /
sucrose-proton symporter, putative similar to
sucrose-proton symporter SUC1 [Arabidopsis thaliana]
GI:407094, sucrose transporter [Arabidopsis thaliana]
GI:12057172; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 491
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 153 REVVGKDSEGEDEMHTMY 206
REV G DS+G+D+M +Y
Sbjct: 304 REVYGGDSKGDDKMKKLY 321
>At1g07480.2 68414.m00801 transcription factor IIA large subunit /
TFIIA large subunit (TFIIA-L) identical to transcription
factor IIA large subunit GI:2826884 from [Arabidopsis
thaliana]
Length = 375
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 116 GGEVPARFSDDAHAALREVHFECRVDHLRHLTKARVPR 3
GG +P + D A A+ E +FEC + + +VPR
Sbjct: 205 GGSIPQQ--DGAGDAIPEANFECDAFRITSIGDRKVPR 240
>At1g07480.1 68414.m00800 transcription factor IIA large subunit /
TFIIA large subunit (TFIIA-L) identical to transcription
factor IIA large subunit GI:2826884 from [Arabidopsis
thaliana]
Length = 375
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 116 GGEVPARFSDDAHAALREVHFECRVDHLRHLTKARVPR 3
GG +P + D A A+ E +FEC + + +VPR
Sbjct: 205 GGSIPQQ--DGAGDAIPEANFECDAFRITSIGDRKVPR 240
>At5g23550.1 68418.m02764 expressed protein
Length = 175
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 66 PERSVRVIAEPGRYFAAAAYTLATMIYA 149
P+R V ++ +P R +A A Y LA++I A
Sbjct: 98 PQRQVTMMLDPARIYATALY-LASIIIA 124
>At5g22355.1 68418.m02608 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain; similar to ULI3 [Arabidopsis
thaliana] GI:17225050
Length = 664
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +1
Query: 181 GRMRCTRCTSYNDGV-YGSFNCILYDHQHVV 270
GR RC C YN G Y C ++ H V
Sbjct: 140 GRRRCGICKGYNGGCSYACLECEVHFHVECV 170
>At5g11800.1 68418.m01377 K+ efflux antiporter, putative (KEA6)
Monovalent cation:proton antiporter family 2 (CPA2
family) member, PMID:11500563; similar to
glutathione-regulated potassium-efflux system protein
KEFB, Escherichia coli, SWISSPROT:P45522
Length = 597
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 30 SQVINTALEVHFPERSVRVIAEPGRYFAAAAYTLATMIYAKREVVGKDSEGEDE 191
+ +I+ ALE F E +A+PG + + A A + R K +E ++E
Sbjct: 75 ADIIDRALEKEFNESDQNEVADPGSFNNSVAGQQAVLETVARVKSTKKNETKEE 128
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related
protein HARP [Homo sapiens] GI:6693791; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF01844: HNH
endonuclease
Length = 1190
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 191 LILPLAVLTHHLSFGVYHGGEGVCRGG 111
L LPL++ +LS H EG+ RGG
Sbjct: 908 LQLPLSLELSYLSESTSHNSEGLLRGG 934
>At4g03550.1 68417.m00486 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1780
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +1
Query: 154 ERWWVRTARGRMRCTRCTSYNDGVYGSFNCIL 249
+R+W + G + +R + ++ ++ FNC L
Sbjct: 1255 DRFWFLSRGGISKASRVINISEDIFAGFNCTL 1286
>At5g06170.1 68418.m00688 sucrose transporter, putative /
sucrose-proton symporter, putative similar to
sucrose-proton symporter SUC1 [Arabidopsis thaliana]
GI:407094, sucrose transporter [Arabidopsis thaliana]
GI:12057172; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 491
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 153 REVVGKDSEGEDEMHTMY 206
REV G DS G+D+M +Y
Sbjct: 305 REVYGGDSAGDDKMKKLY 322
>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 169 RTARGRMRCTRCTSYNDGVYGSFNC 243
R G +C C DG YG+++C
Sbjct: 333 RLGHGDGKCRVCRKNVDGFYGAYSC 357
>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 169 RTARGRMRCTRCTSYNDGVYGSFNC 243
R G+ C C DG YG ++C
Sbjct: 300 RLGHGQNTCGVCRKKVDGFYGGYSC 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,235,123
Number of Sequences: 28952
Number of extensions: 108449
Number of successful extensions: 318
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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