Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H12
         (312 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    61   3e-12
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   3.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   4.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   8.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   8.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   8.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 60.9 bits (141), Expect = 3e-12
 Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
 Frame = +3

Query: 36  DTAVKMMKEGTMSE--DDFIEEAKVMTKLQHQNLVQLYGVCSKHRPIYIVTEFMRYGSLF 209
           D A+K +K G+  +  +DF+ EA +M + +H N++ L GV +K  P+ I+TEFM  GSL 
Sbjct: 663 DVAIKTLKPGSADKARNDFLTEASIMGQFEHPNVIFLQGVVTKSNPVMIITEFMENGSLD 722

Query: 210 NYLRRTSADQLGHPVQLDICIQ-VCRGMAYLERHN 311
            +LR  + D     +QL   ++ +  GM YL   N
Sbjct: 723 TFLR--ANDGKFQVLQLVGMLRGIASGMQYLAEMN 755


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = +3

Query: 72  SEDDFIEEAKVMTKLQHQNLVQLYGVCSKHRPIYIVTEFMRYGSLFNYLRRTSADQLGHP 251
           S  +F+ EAK+           +  + ++H P+ +    M +G     L  TS    G P
Sbjct: 290 STPNFLSEAKIFPPTPGSFNFSMAALATEHTPLSVKFPGMGHGLQPPDLAGTSQGSAGLP 349


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 187 LCVTGRCLTIYGALPPTSSDILFSSIY 267
           L +T   +TI  +LPPT    L S  Y
Sbjct: 253 LSMTVFLMTIRESLPPTEKTPLISLYY 279


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 190 INSVTMYIGRCF 155
           + S+ +Y+G CF
Sbjct: 280 VKSIDVYLGTCF 291


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 190 INSVTMYIGRCF 155
           + S+ +Y+G CF
Sbjct: 280 VKSIDVYLGTCF 291


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 190 INSVTMYIGRCF 155
           + S+ +Y+G CF
Sbjct: 219 VKSIDVYLGTCF 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,931
Number of Sequences: 438
Number of extensions: 1419
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)