Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H11
         (463 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  77   5e-15
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   4e-08
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   1e-07
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   3e-06
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)                  40   8e-04
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)               34   0.050
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)                  33   0.11 
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         33   0.15 
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_37351| Best HMM Match : DEAD (HMM E-Value=0)                        31   0.61 
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.81 
SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.81 
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_9558| Best HMM Match : DEAD (HMM E-Value=0)                         29   1.9  
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)              29   1.9  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        29   2.5  
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)                  28   3.3  
SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017)              28   3.3  
SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017)              28   3.3  
SB_17563| Best HMM Match : DEAD (HMM E-Value=0)                        28   3.3  
SB_11973| Best HMM Match : Cupin_1 (HMM E-Value=3.4)                   28   3.3  
SB_2247| Best HMM Match : DEAD (HMM E-Value=0)                         28   3.3  
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)            28   4.3  
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 

>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 77.4 bits (182), Expect = 5e-15
 Identities = 34/55 (61%), Positives = 45/55 (81%)
 Frame = +3

Query: 12  SEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 176
           +EDY+HRIGRT RS   GTSY FFT +N++QAK+LVSVLQEA Q ++P+L ++ D
Sbjct: 367 TEDYVHRIGRTARSDRTGTSYTFFTVNNAKQAKELVSVLQEAKQHVNPKLLNLQD 421


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 25/53 (47%), Positives = 35/53 (66%)
 Frame = +3

Query: 15   EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 173
            E+Y+HRIGRTGR    G + +FF   N   AK+L+ +L+E+ Q I   L+SMA
Sbjct: 1182 EEYVHRIGRTGRVGHTGLATSFFNHKNKNVAKELMDILEESKQEIPSWLESMA 1234


>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 24/56 (42%), Positives = 34/56 (60%)
 Frame = +3

Query: 6   RGSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 173
           R  EDY+HR+GRTGR+   GTS  F +  + R A  L+ ++ +ANQ +   L  MA
Sbjct: 121 RHIEDYVHRVGRTGRAGRSGTSLTFISREDWRSAHKLIKIMVQANQEVPDFLHDMA 176


>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
 Frame = +3

Query: 15   EDYIHRIGRTGRSKAKGTSYAFFTPS-NSRQAKDLVSVLQEANQIISPQLQSMAD 176
            ++Y+HRIGRTGR   KG +  FF    + + A+ LV VL EANQ +   L+ +A+
Sbjct: 1044 DEYVHRIGRTGRIGNKGKATTFFLRGRDDKVARGLVKVLSEANQEVPEWLEEIAE 1098


>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
          Length = 428

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 20/42 (47%), Positives = 26/42 (61%)
 Frame = +3

Query: 3   ARGSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVL 128
           A+  EDY HRIGRTGR+   G + +F T S+S    DL  +L
Sbjct: 362 AKTIEDYTHRIGRTGRAGKTGIAVSFLTQSDSGVFYDLKQLL 403


>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
          Length = 238

 Score = 34.3 bits (75), Expect = 0.050
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 15  EDYIHRIGRTGRSKAKGTSYAFFT 86
           EDYIHR+GRT R+   G S  F T
Sbjct: 127 EDYIHRVGRTARAGRSGRSVTFVT 150


>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
          Length = 500

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 15  EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQ 131
           E+Y+H+IGR GR  A G S +F   ++      L++ LQ
Sbjct: 410 EEYVHQIGRAGRLGATGWSISFINNASKGLFLQLINKLQ 448


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +3

Query: 15  EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQ 164
           E YIHR GRTGR    G + +F T  + + A++L  +L+   Q I  +L+
Sbjct: 414 ECYIHRCGRTGRIGHHGIATSFLT-LDCKIAEELKEMLEVMEQPIPKELK 462



 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 4   HEALRITFIELVGQEDPKLKELHMHSLPHPTPAKLKISSPFYKKLIR 144
           H  +  +F+ L  +   +LKE+ +  +  P P +LK+   F KK+IR
Sbjct: 428 HHGIATSFLTLDCKIAEELKEM-LEVMEQPIPKELKMPKQFGKKIIR 473


>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 15  EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 116
           E YIHRIGR+GR   KG +  F    + R  +D+
Sbjct: 318 ELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 351


>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 688

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 21  YIHRIGRTGRSKAKGTSYAFFTP 89
           YIHR GRTGR+  +G    F+ P
Sbjct: 388 YIHRSGRTGRAGREGICIVFYKP 410


>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 697

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 15  EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQS 167
           E Y+HR GRT R+  +G S     P +    +  +  L  A+  ++ QL+S
Sbjct: 538 EVYVHRSGRTARASHEGLSVVLVGPEDLAHYRKTMKTLNNAS--LNKQLKS 586


>SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 15  EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQ 131
           E Y   IGR GR     + Y F+ P +   ++ L++ +Q
Sbjct: 237 ESYYQEIGRAGRDGEPSSCYVFYKPGDFATSRYLINEMQ 275


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 15  EDYIHRIGRTGR-SKAKGTSYAFFTP 89
           ++YIHR+GRT R ++ KG +  F  P
Sbjct: 900 KEYIHRVGRTARGTEGKGHALLFLLP 925


>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 436

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 15  EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 116
           +DYIHR+GRT R+   G + +  T  +  + K +
Sbjct: 329 KDYIHRVGRTARAGRGGMAISMVTQYDIDRVKKI 362


>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
          Length = 490

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 15  EDYIHRIGRTGRSKAKGTSYAFFTPSNS 98
           E Y+HRIGRTGR    G +  F     S
Sbjct: 432 ETYLHRIGRTGRFGKSGIAVNFIDGQRS 459


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 15  EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 116
           E Y+HRIGR GR   +G +  +   +N ++ ++L
Sbjct: 296 ETYLHRIGRAGRFGTEGMAVTYV--ANGKEEREL 327


>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
          Length = 978

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 18  DYIHRIGRTGR 50
           DYIHR+GRTGR
Sbjct: 779 DYIHRVGRTGR 789


>SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017)
          Length = 91

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 6   RGSEDYIHRIGRTGRSKAKGTSYAFFT 86
           + SE Y+HRIGR+GR    G +    T
Sbjct: 22  KNSETYLHRIGRSGRFGHLGVAINLIT 48


>SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017)
          Length = 91

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 6   RGSEDYIHRIGRTGRSKAKGTSYAFFT 86
           + SE Y+HRIGR+GR    G +    T
Sbjct: 22  KNSETYLHRIGRSGRFGHLGVAINLIT 48


>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 6   RGSEDYIHRIGRTGRSKAKGTSYAFFT 86
           + SE Y+HRIGR+GR    G +    T
Sbjct: 370 KNSETYLHRIGRSGRFGHLGVAINLIT 396


>SB_11973| Best HMM Match : Cupin_1 (HMM E-Value=3.4)
          Length = 394

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 7   EALRITFIELVGQEDP-KLKELHMHSLPHPTPAKLKIS 117
           E L++ +  L GQ+DP +++++  H  P+PT +++ I+
Sbjct: 35  ETLKLIYARLTGQQDPNQIRQVISHQ-PNPTTSQVHIT 71


>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 6   RGSEDYIHRIGRTGRSKAKGTSYAFFT 86
           + SE Y+HRIGR+GR    G +    T
Sbjct: 370 KNSETYLHRIGRSGRFGHLGVAINLIT 396


>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
          Length = 331

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 21  YIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQE 134
           ++HR GRT R   +G +  F  P+      D +S+ Q+
Sbjct: 174 FVHRCGRTARIGNEGNAVVFLLPTEDSYV-DFISINQK 210


>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 21  YIHRIGRTGRSKAKGTSYA 77
           ++HR+GR  R+   GT+Y+
Sbjct: 559 FVHRVGRVARAGRSGTAYS 577


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,068,110
Number of Sequences: 59808
Number of extensions: 172570
Number of successful extensions: 466
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)