Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H11
         (463 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       48   4e-08
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 48.4 bits (110), Expect = 4e-08
 Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
 Frame = +3

Query: 6   RGSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAK-DLVSVLQEANQII 149
           +G ++Y+HRIGRTGR   +G + +FF P      + DLV +L++ANQ +
Sbjct: 530 KGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQANQSV 578


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 429 SNNKLN*PQLQMLTKYFTQVLIRGLLLTVKIHTIKFKLDINSHQIFDVHHLLCRNCY 259
           S   +N PQL ML+    +  +R L + V +       ++++HQ F +   L  + Y
Sbjct: 320 SAGSVNTPQLLMLSGIGPKEHLRSLGIPVVVDLPGVGENLHNHQSFGMDFSLNEDFY 376


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 43  QEDPKLKELHMHSLPHP 93
           Q  P  ++LH H   HP
Sbjct: 806 QSQPPHQQLHHHQSTHP 822


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,894
Number of Sequences: 438
Number of extensions: 1446
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)