Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H11
(463 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 78 3e-15
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 70 7e-13
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 68 4e-12
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 68 4e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 68 4e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 68 4e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 66 1e-11
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 63 1e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 55 3e-08
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 54 4e-08
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 54 4e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 54 6e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 53 1e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 50 6e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 44 4e-05
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 43 9e-05
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 42 2e-04
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 42 3e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 38 0.004
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 37 0.006
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 37 0.008
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 36 0.010
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 35 0.023
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 35 0.023
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 35 0.023
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 35 0.031
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 34 0.041
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 33 0.094
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 33 0.12
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 32 0.16
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 32 0.16
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 32 0.22
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 31 0.29
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 31 0.29
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 31 0.38
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 31 0.38
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 31 0.50
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 31 0.50
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 31 0.50
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 30 0.66
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 30 0.66
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 30 0.66
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 30 0.66
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 30 0.88
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 30 0.88
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 29 1.2
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 29 1.2
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 29 1.2
At2g33320.1 68415.m04084 C2 domain-containing protein low simila... 29 1.5
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 29 1.5
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 28 2.7
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 28 2.7
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 28 2.7
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 28 3.5
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 27 4.7
At1g78080.1 68414.m09099 AP2 domain-containing transcription fac... 27 4.7
At1g36060.1 68414.m04481 AP2 domain-containing transcription fac... 27 4.7
At1g22190.1 68414.m02775 AP2 domain-containing transcription fac... 27 6.2
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 27 8.2
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 27 8.2
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 78.2 bits (184), Expect = 3e-15
Identities = 34/52 (65%), Positives = 44/52 (84%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSM 170
EDY+HRIGRTGR+ AKGT+Y FFT +N+R AK+L ++LQEA Q +SP+L SM
Sbjct: 426 EDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASM 477
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 70.1 bits (164), Expect = 7e-13
Identities = 29/52 (55%), Positives = 41/52 (78%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSM 170
EDYIHRIGRTGR+ AKG ++ FFT N++ A++LV +LQEA Q++ P L ++
Sbjct: 492 EDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTLSAL 543
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 67.7 bits (158), Expect = 4e-12
Identities = 28/55 (50%), Positives = 40/55 (72%)
Frame = +3
Query: 9 GSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 173
G EDY+HRIGRTGR+ A G +Y FF +++ A DL+ +L+ ANQ + PQ++ MA
Sbjct: 553 GVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMA 607
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.7 bits (158), Expect = 4e-12
Identities = 28/55 (50%), Positives = 40/55 (72%)
Frame = +3
Query: 9 GSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 173
G EDY+HRIGRTGR+ A G ++ FF +S+ A DL+ +L+ ANQ + PQ++ MA
Sbjct: 482 GVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.7 bits (158), Expect = 4e-12
Identities = 28/55 (50%), Positives = 40/55 (72%)
Frame = +3
Query: 9 GSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 173
G EDY+HRIGRTGR+ A G ++ FF +S+ A DL+ +L+ ANQ + PQ++ MA
Sbjct: 482 GVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 67.7 bits (158), Expect = 4e-12
Identities = 28/55 (50%), Positives = 40/55 (72%)
Frame = +3
Query: 9 GSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 173
G EDY+HRIGRTGR+ A G ++ FF +S+ A DL+ +L+ ANQ + PQ++ MA
Sbjct: 482 GVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 65.7 bits (153), Expect = 1e-11
Identities = 28/55 (50%), Positives = 40/55 (72%)
Frame = +3
Query: 9 GSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 173
G EDY+HRIGRTGR+ A G ++ FFT + + A DL+ VL+ ANQ + PQ++ +A
Sbjct: 759 GVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIA 813
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 62.9 bits (146), Expect = 1e-10
Identities = 27/50 (54%), Positives = 37/50 (74%)
Frame = +3
Query: 12 SEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQL 161
+EDY+HRIGRTGR+ KG ++ FFTP N A +LV+VL+EA Q++ L
Sbjct: 447 TEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADL 496
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 54.8 bits (126), Expect = 3e-08
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 173
+DY+HRIGRTGR+ G + AFF +N+ AK L ++QEANQ + L A
Sbjct: 487 DDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVPDWLTRYA 539
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 54.4 bits (125), Expect = 4e-08
Identities = 24/53 (45%), Positives = 35/53 (66%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 173
+DY+HRIGRTGR+ G + AFF +N++ A+ L ++QEANQ + L A
Sbjct: 490 DDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYA 542
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 54.4 bits (125), Expect = 4e-08
Identities = 24/53 (45%), Positives = 35/53 (66%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 173
+DY+HRIGRTGR+ G + AFF +N++ A+ L ++QEANQ + L A
Sbjct: 490 DDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYA 542
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 53.6 bits (123), Expect = 6e-08
Identities = 22/54 (40%), Positives = 36/54 (66%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 176
EDY+HR+GRTGR+ KG + F + +++ A DLV L+ + Q + L+++AD
Sbjct: 858 EDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALAD 911
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 173
+DY+HRIGRTGR+ G + AFF N+ A+ L ++QEANQ + L A
Sbjct: 500 DDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYA 552
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 50.4 bits (115), Expect = 6e-07
Identities = 20/54 (37%), Positives = 36/54 (66%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 176
EDY+HR+GRTGR+ KG + F + +++ A DLV L+ + Q + ++++A+
Sbjct: 696 EDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAVAE 749
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 44.4 bits (100), Expect = 4e-05
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQA-KDLVSVLQEANQIISPQLQSMAD 176
E+Y+HRIGRTGR G + F + S DL +LQEA Q I P L + D
Sbjct: 479 ENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELND 533
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 43.2 bits (97), Expect = 9e-05
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 ARGSEDYIHRIGRTGRSKAK-GTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 173
A+ + ++HRIGRTGR+ + G +Y T +R A +LV+ L A Q + P+L +A
Sbjct: 551 AKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDLA 608
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSR-QAKDLVSVLQEANQIISPQLQSM 170
E+Y+HRIGRTGR G + F + S DL +LQEA Q I P L +
Sbjct: 430 ENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAEL 482
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQL 161
E Y HRIGRTGR+ G + +F T ++ DL +L ++N + P+L
Sbjct: 658 EMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPEL 706
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 37.5 bits (83), Expect = 0.004
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 21 YIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVL 128
YIHRIGRTGR+ + G+S + +P +D+ S L
Sbjct: 420 YIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFL 455
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 37.1 bits (82), Expect = 0.006
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +3
Query: 3 ARGSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 155
A + D++HRIGRT R+ GT + +T +N +DLV ++EA ++ P
Sbjct: 501 ASSAVDFLHRIGRTARAGQYGTVTSLYTEAN----RDLVEAIREAVKMGQP 547
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 116
E+Y+HRIGR+GR KG + F T + R D+
Sbjct: 362 ENYLHRIGRSGRFGRKGVAINFMTSEDERMMADI 395
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 36.3 bits (80), Expect = 0.010
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +3
Query: 21 YIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEA 137
YIHR+GRT R +G S F TPS + ++ LQEA
Sbjct: 402 YIHRVGRTARFYTQGKSLLFLTPSEEK----MIEKLQEA 436
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 35.1 bits (77), Expect = 0.023
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 116
E+Y+HRIGR+GR KG + F T + R D+
Sbjct: 360 ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 393
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQL 161
++YIH IGR R KGT+ F + DLV+ L+ + I +L
Sbjct: 440 KEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKEL 488
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQL 161
++YIH IGR R KGT+ F + DLV+ L+ + I +L
Sbjct: 303 KEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKEL 351
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 34.7 bits (76), Expect = 0.031
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 116
E+Y+HRIGR+GR KG + F T + R D+
Sbjct: 360 ENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDI 393
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 34.3 bits (75), Expect = 0.041
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 12 SEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAK 110
+E ++HR GRTGR+ KG++ ++ SR K
Sbjct: 429 TETFVHRTGRTGRAGKKGSAILIYSQDQSRAVK 461
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 33.1 bits (72), Expect = 0.094
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 116
E YIHRIGR GR +G + F S+ + KD+
Sbjct: 343 ELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDI 376
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.7 bits (71), Expect = 0.12
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 155
E ++HR GRTGR+ +G++ T S R + L + + ISP
Sbjct: 432 ETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISP 478
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 32.3 bits (70), Expect = 0.16
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 21 YIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSM 170
YIHRIGR+GR+ G + F+T + +++ + + + + + S+
Sbjct: 464 YIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSGCEVPSWIMSL 513
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 32.3 bits (70), Expect = 0.16
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 21 YIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 116
++HR+GR R+ G +Y+F TP + DL
Sbjct: 355 FVHRVGRAARAGRTGCAYSFVTPEDMPYMLDL 386
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 31.9 bits (69), Expect = 0.22
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSM 170
E YIHRIGR+GR KG + F D + +L++ Q S Q+ M
Sbjct: 356 ELYIHRIGRSGRFGRKGVAINFV-------KSDDIKILRDIEQYYSTQIDEM 400
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 31.5 bits (68), Expect = 0.29
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 18 DYIHRIGRTGRSK-AKGTSYAFFTP 89
DYIHR+GRT R + AKG + TP
Sbjct: 483 DYIHRVGRTARGEGAKGKALLVLTP 507
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 31.5 bits (68), Expect = 0.29
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 18 DYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 116
+Y+HR+GRT R KG + F P K+L
Sbjct: 432 EYVHRVGRTARIGEKGEALLFLQPIEIDYLKEL 464
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 31.1 bits (67), Expect = 0.38
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 6 RGSEDYIHRIGRTGRSKAKGTSYAFFTPSN 95
R + Y+HR+GRT R+ +G + F T S+
Sbjct: 491 REIDSYVHRVGRTARAGREGYAVTFVTDSD 520
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 31.1 bits (67), Expect = 0.38
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 12 SEDYIHRIGRTGRSKAKGTSYAFFTPSNS 98
+E Y+HR GRT R+ A G S A P+ +
Sbjct: 583 AEVYVHRCGRTARAFADGCSIALIEPNET 611
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 30.7 bits (66), Expect = 0.50
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTP 89
E YIHR+GRTGR +G P
Sbjct: 394 EQYIHRLGRTGRKGKEGEGILLLAP 418
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 30.7 bits (66), Expect = 0.50
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTP 89
E YIHR+GRTGR +G P
Sbjct: 420 EQYIHRLGRTGRKGKEGEGVLLLAP 444
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 30.7 bits (66), Expect = 0.50
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTP 89
E YIHR+GRTGR +G P
Sbjct: 722 EQYIHRLGRTGRKGKEGEGVLLLAP 746
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 30.3 bits (65), Expect = 0.66
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 12 SEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 176
++ Y+HR+GR GR KG + F S ++++ +QE ++ +L D
Sbjct: 369 ADTYLHRVGRAGRFGTKGLAITFVA---SASDSEVLNQVQERFEVDIKELPEQID 420
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 30.3 bits (65), Expect = 0.66
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 12 SEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 176
++ Y+HR+GR GR KG + F S ++++ +QE ++ +L D
Sbjct: 286 ADTYLHRVGRAGRFGTKGLAITFVA---SASDSEVLNQVQERFEVDIKELPEQID 337
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 30.3 bits (65), Expect = 0.66
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 12 SEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 176
++ Y+HR+GR GR KG + F S ++++ +QE ++ +L D
Sbjct: 369 ADTYLHRVGRAGRFGTKGLAITFVA---SASDSEVLNQVQERFEVDIKELPEQID 420
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 30.3 bits (65), Expect = 0.66
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 12 SEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAK 110
+E ++HR GRTGR+ KG++ +R K
Sbjct: 441 TETFVHRTGRTGRAGKKGSAILIHGQDQTRAVK 473
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 29.9 bits (64), Expect = 0.88
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 6 RGSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEA 137
+ S DY+HR GRT R AKG T SR+ + L + ++EA
Sbjct: 450 KNSIDYLHRTGRTARMGAKGK----VTSLVSRKDQMLAARIEEA 489
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 29.9 bits (64), Expect = 0.88
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 6 RGSEDYIHRIGRTGRSKAKGTSYAFFTPSN 95
R DY+HR+GRT R+ G + + T ++
Sbjct: 381 RDPRDYVHRVGRTARAGRGGLAVSIITETD 410
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 12 SEDYIHRIGRTGRSKAKG 65
S+DYIHR+GRT R+ G
Sbjct: 341 SKDYIHRVGRTARAGRSG 358
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTP 89
E YIHR+GRTGR G P
Sbjct: 716 EQYIHRLGRTGREGKGGKGLLLIAP 740
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSYAFFTP 89
E YIHR+GRTGR G P
Sbjct: 669 EQYIHRLGRTGREGKGGEGLLLIAP 693
>At2g33320.1 68415.m04084 C2 domain-containing protein low
similarity to splicing coactivator subunit SRm300 [Homo
sapiens] GI:6649242; contains Pfam profile PF00168: C2
domain
Length = 602
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 19 ITFIELVGQEDPKLKELHMHSLPHPTPAKLKISSPFYKKLI 141
+ + +L+G+EDP L+ LH++S + SS Y+ ++
Sbjct: 166 VGYRDLLGEEDPNLQNLHLNSFKGSSKNPQSPSSKQYQSVV 206
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 21 YIHRIGRTGRSKAKGTSYAFFTPSNS 98
+IHR+GRT R + +G + F P +
Sbjct: 353 FIHRVGRTARMERQGRAIVFLMPKET 378
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 6 RGSEDYIHRIGRTGR 50
R SE Y+HR+GR+GR
Sbjct: 440 RTSESYLHRVGRSGR 454
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 6 RGSEDYIHRIGRTGR 50
R SE Y+HR+GR+GR
Sbjct: 440 RTSESYLHRVGRSGR 454
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 6 RGSEDYIHRIGRTGR 50
R SE Y+HR+GR+GR
Sbjct: 470 RTSESYLHRVGRSGR 484
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 6 RGSEDYIHRIGRTGRSKAKGTSYAFFTPSNS 98
R E YIHR GRTGR+ G + + S
Sbjct: 425 REVEAYIHRSGRTGRAGNTGVAVTLYDSRKS 455
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 18 DYIHRIGRTGRSK-AKGTSYAFFTP 89
+YIHR+GRT R + AKG + P
Sbjct: 417 EYIHRVGRTARGEGAKGKALLVLIP 441
>At1g78080.1 68414.m09099 AP2 domain-containing transcription factor
RAP2.4 identical to AP2 domain containing protein
GI:2281633 from [Arabidopsis thaliana]
Length = 334
Score = 27.5 bits (58), Expect = 4.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 146 NKPSVAING*PQRRWRRWMEQKQIWRRTWRWWI 244
+KP+ G QR W +W+ + ++ R R W+
Sbjct: 146 SKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWL 178
>At1g36060.1 68414.m04481 AP2 domain-containing transcription
factor, putative similar to AP2 domain transcription
factor GI:4567204 from [Arabidopsis thaliana]
Length = 314
Score = 27.5 bits (58), Expect = 4.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 146 NKPSVAING*PQRRWRRWMEQKQIWRRTWRWWI 244
+KP+ G QR W +W+ + ++ R R W+
Sbjct: 137 SKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWL 169
>At1g22190.1 68414.m02775 AP2 domain-containing transcription
factor, putative similar to AP2 domain containing
protein RAP2.4 GI:2281633 from [Arabidopsis thaliana]
Length = 261
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 149 KPSVAING*PQRRWRRWMEQKQIWRRTWRWWI 244
KP+ G QR W +W+ + ++ R R W+
Sbjct: 78 KPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWL 109
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 15 EDYIHRIGRTGRSKAKGTSY 74
E Y+HR+GR GR KG +
Sbjct: 429 EVYLHRVGRAGRFGRKGAVF 448
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 21 YIHRIGRTGRSKAKGT 68
Y HR GRTGR KGT
Sbjct: 491 YAHRAGRTGRLGRKGT 506
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,731,121
Number of Sequences: 28952
Number of extensions: 118964
Number of successful extensions: 389
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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