Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H10
         (118 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   2.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   2.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   2.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   2.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   2.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   2.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   2.7  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        19   4.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          19   6.2  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 1   ARGRRRSPEFSEISRSNAYPRNVQ 72
           ++ +R SP+ S +S    YP   Q
Sbjct: 470 SKRQRTSPQLSPMSSLPPYPNRTQ 493


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 105 RRIPIPFGGTLL 70
           ++IP P+GG L+
Sbjct: 662 KKIPTPYGGRLV 673


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 105 RRIPIPFGGTLL 70
           ++IP P+GG L+
Sbjct: 662 KKIPTPYGGRLV 673


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 105 RRIPIPFGGTLL 70
           ++IP P+GG L+
Sbjct: 662 KKIPTPYGGRLV 673


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 105 RRIPIPFGGTLL 70
           ++IP P+GG L+
Sbjct: 662 KKIPTPYGGRLV 673


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 87  FGGTLLNVSRVSI 49
           FGG  LNVS + I
Sbjct: 571 FGGFFLNVSSIPI 583


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 87  FGGTLLNVSRVSI 49
           FGG  LNVS + I
Sbjct: 571 FGGFFLNVSSIPI 583


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 97  TDTVRWYSPERF 62
           T  VR Y+PER+
Sbjct: 284 TPLVRSYAPERY 295


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 116 SKSRVEYRYRSV 81
           SK +  Y YRSV
Sbjct: 235 SKKKTRYYYRSV 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.126    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,997
Number of Sequences: 336
Number of extensions: 237
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 19
effective length of database: 116,201
effective search space used:  2207819
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.4 bits)