Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H10
         (118 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr...    26   4.3  
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    26   4.3  
AF016677-5|AAB66143.1|  128|Caenorhabditis elegans Hypothetical ...    25   9.9  

>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
           protein C18C4.5b protein.
          Length = 1046

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 2   HEAEDEVRNLVKSAGQM 52
           HEA+DE+  L   AGQ+
Sbjct: 634 HEAQDEIEKLTNQAGQL 650


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
           protein C18C4.5a protein.
          Length = 1022

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 2   HEAEDEVRNLVKSAGQM 52
           HEA+DE+  L   AGQ+
Sbjct: 634 HEAQDEIEKLTNQAGQL 650


>AF016677-5|AAB66143.1|  128|Caenorhabditis elegans Hypothetical
           protein ZK1240.6 protein.
          Length = 128

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 11  EDEVRNLVKSAGQMLTLETFRRVPP 85
           + +VRNL K+ G M T+E F++  P
Sbjct: 60  DGDVRNLQKNFGLMQTIEMFQQDLP 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.126    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,829
Number of Sequences: 27780
Number of extensions: 26117
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 12,740,198
effective HSP length: 19
effective length of database: 12,212,378
effective search space used: 232035182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)