Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H10
         (118 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55350.4 68414.m06326 calpain-type cysteine protease family i...    25   9.3  
At1g55350.3 68414.m06325 calpain-type cysteine protease family i...    25   9.3  
At1g55350.2 68414.m06324 calpain-type cysteine protease family i...    25   9.3  
At1g55350.1 68414.m06323 calpain-type cysteine protease family i...    25   9.3  
At1g06190.1 68414.m00651 expressed protein                             25   9.3  

>At1g55350.4 68414.m06326 calpain-type cysteine protease family
            identical to calpain-like protein GI:20268660 from
            [Arabidopsis thaliana]; contains Pfam profiles: PF00648
            Calpain family cysteine protease, PF01067 Calpain large
            subunit,domain III; identical to cDNA calpain-like
            protein GI:20268659
          Length = 2151

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +2

Query: 14   DEVRNLVKSAG----QMLTLETFRRVPPNGIGIRRETCS 118
            D +RN  + AG    +M   + FR  PP  +  RR+ C+
Sbjct: 1174 DRLRNEERVAGSIFYKMQCRKGFRHEPPTNVDYRRDMCA 1212


>At1g55350.3 68414.m06325 calpain-type cysteine protease family
            identical to calpain-like protein GI:20268660 from
            [Arabidopsis thaliana]; contains Pfam profiles: PF00648
            Calpain family cysteine protease, PF01067 Calpain large
            subunit,domain III; identical to cDNA calpain-like
            protein GI:20268659
          Length = 2151

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +2

Query: 14   DEVRNLVKSAG----QMLTLETFRRVPPNGIGIRRETCS 118
            D +RN  + AG    +M   + FR  PP  +  RR+ C+
Sbjct: 1174 DRLRNEERVAGSIFYKMQCRKGFRHEPPTNVDYRRDMCA 1212


>At1g55350.2 68414.m06324 calpain-type cysteine protease family
            identical to calpain-like protein GI:20268660 from
            [Arabidopsis thaliana]; contains Pfam profiles: PF00648
            Calpain family cysteine protease, PF01067 Calpain large
            subunit,domain III; identical to cDNA calpain-like
            protein GI:20268659
          Length = 2151

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +2

Query: 14   DEVRNLVKSAG----QMLTLETFRRVPPNGIGIRRETCS 118
            D +RN  + AG    +M   + FR  PP  +  RR+ C+
Sbjct: 1174 DRLRNEERVAGSIFYKMQCRKGFRHEPPTNVDYRRDMCA 1212


>At1g55350.1 68414.m06323 calpain-type cysteine protease family
            identical to calpain-like protein GI:20268660 from
            [Arabidopsis thaliana]; contains Pfam profiles: PF00648
            Calpain family cysteine protease, PF01067 Calpain large
            subunit,domain III; identical to cDNA calpain-like
            protein GI:20268659
          Length = 2151

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +2

Query: 14   DEVRNLVKSAG----QMLTLETFRRVPPNGIGIRRETCS 118
            D +RN  + AG    +M   + FR  PP  +  RR+ C+
Sbjct: 1174 DRLRNEERVAGSIFYKMQCRKGFRHEPPTNVDYRRDMCA 1212


>At1g06190.1 68414.m00651 expressed protein
          Length = 401

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 7   GRRRSPEFSEISRSNAYPRNVQESTTERYRYSTRDLL 117
           G RR+P+FS +++      N Q    E +     D+L
Sbjct: 68  GYRRNPDFSRLNKHGYRGNNRQSGGREDFDIENSDML 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.126    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,101
Number of Sequences: 28952
Number of extensions: 25195
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 12,070,560
effective HSP length: 19
effective length of database: 11,520,472
effective search space used: 218888968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)