Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H09
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...   199   2e-52
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...   199   2e-52
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...   102   2e-23
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...   102   2e-23
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...   102   2e-23
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    66   3e-12
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    37   0.002
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    36   0.003
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    27   1.5  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    26   2.5  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   5.9  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   7.8  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    25   7.8  

>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  199 bits (485), Expect = 2e-52
 Identities = 91/100 (91%), Positives = 93/100 (93%)
 Frame = -2

Query: 474 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMK 295
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG IEPSL+ LA K
Sbjct: 29  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASK 88

Query: 294 YNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRPKKKIK 175
           YNCEK ICRKCYARL PRATNCRK KCGHTN LRPKKK+K
Sbjct: 89  YNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 128


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  199 bits (485), Expect = 2e-52
 Identities = 91/100 (91%), Positives = 93/100 (93%)
 Frame = -2

Query: 474 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMK 295
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG IEPSL+ LA K
Sbjct: 29  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASK 88

Query: 294 YNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRPKKKIK 175
           YNCEK ICRKCYARL PRATNCRK KCGHTN LRPKKK+K
Sbjct: 89  YNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 128


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  102 bits (245), Expect = 2e-23
 Identities = 48/48 (100%), Positives = 48/48 (100%)
 Frame = -2

Query: 474 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 331
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 29  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score =  102 bits (245), Expect = 2e-23
 Identities = 48/48 (100%), Positives = 48/48 (100%)
 Frame = -2

Query: 474 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 331
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 29  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76



 Score =  102 bits (245), Expect = 2e-23
 Identities = 48/48 (100%), Positives = 48/48 (100%)
 Frame = -2

Query: 474 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 331
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 105 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score =  102 bits (245), Expect = 2e-23
 Identities = 48/48 (100%), Positives = 48/48 (100%)
 Frame = -2

Query: 474 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 331
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  102 bits (245), Expect = 2e-23
 Identities = 48/48 (100%), Positives = 48/48 (100%)
 Frame = -2

Query: 474 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 331
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  102 bits (245), Expect = 2e-23
 Identities = 48/48 (100%), Positives = 48/48 (100%)
 Frame = -2

Query: 474 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 331
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  102 bits (245), Expect = 2e-23
 Identities = 48/48 (100%), Positives = 48/48 (100%)
 Frame = -2

Query: 474 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 331
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 29  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 65.7 bits (153), Expect = 3e-12
 Identities = 27/49 (55%), Positives = 38/49 (77%)
 Frame = -2

Query: 474 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGT 328
           ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG+
Sbjct: 29  RVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = -2

Query: 453 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 340
           I  ++QRLI+AG+ L+D  +L  Y IQ   ++HLV  L
Sbjct: 39  IEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = -2

Query: 474 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGGTIEP 319
           KIQ ++    ++Q+LI++G+ L D +T+ +YNI+++   + +V R +  T  P
Sbjct: 30  KIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCMVSRPKTSTSTP 82


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 443 INSDSSLPASNWKMAVHCLTTTFK 372
           I     LP+  +K A+HC TT F+
Sbjct: 137 IKQRMQLPSRKYKSALHCATTVFR 160


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 253 SPSSCNQLQEDQVWTHKQPPPQEEDQG 173
           SP SC +  E  + ++     QEEDQG
Sbjct: 447 SPESCRKQYEKTIASYSSNQRQEEDQG 473


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 148  MNERINKLILDLLLGAEVVCVS 213
            MNE IN L  +L+ G  +VC S
Sbjct: 1134 MNEDINSLSSELIYGGNLVCGS 1155


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 249  GDEHSTCDKSFSHSCTS*PRCEEMAQWYL 335
            G+    C  S +   TS   C E A WYL
Sbjct: 968  GNSFGVCVSSPNSGLTSHVTCAEKANWYL 996


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 349 NQVKGGLFLNVVVRQCTAIFQLLAGK 426
           N +K   F ++  R C  +FQ++AGK
Sbjct: 280 NLLKKAFFDHLFGRHCLLLFQVIAGK 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,735
Number of Sequences: 5004
Number of extensions: 39765
Number of successful extensions: 100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)