Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H09
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.7  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   6.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 274  LSQVLCSSPSSCNQLQEDQVWTHKQPPP 191
            LS+ + SS  S     E   W  +QPPP
Sbjct: 1330 LSEHIYSSIDSDYSTLERTAWRQQQPPP 1357



 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 222 SSCNWLHEDGDEHSTCD 272
           +SC WL E G++  + D
Sbjct: 29  TSCKWLSEGGNDTRSAD 45


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = +3

Query: 183 SSWGGGCLCVHTWSSCNWLHED 248
           + W   C+ V      NW+H D
Sbjct: 51  NKWSKVCIVVRRKLEENWIHVD 72


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 197 RLFVCPHLVFLQLVARG 247
           +L +C  LVF+Q++  G
Sbjct: 768 QLIICSGLVFVQILING 784


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = -1

Query: 241  CNQLQEDQVWTHKQPPPQEEDQGLI 167
            C  L    +    QPPP     G+I
Sbjct: 1120 CAALTSQSLQVSWQPPPNTHSNGII 1144


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = -1

Query: 241  CNQLQEDQVWTHKQPPPQEEDQGLI 167
            C  L    +    QPPP     G+I
Sbjct: 1116 CAALTSQSLQVSWQPPPNTHSNGII 1140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,835
Number of Sequences: 438
Number of extensions: 2979
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)