Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H08
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    36   0.019
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576...    33   0.13 
06_03_0553 - 22048530-22048532,22049733-22050848                       29   2.2  
02_01_0046 - 311752-312138,312220-312372,312458-312653,312702-31...    27   6.7  
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953           27   6.7  
10_01_0026 - 351737-353443                                             27   8.8  
05_04_0137 + 18343106-18344686                                         27   8.8  

>11_06_0561 -
           24984960-24985205,24985283-24985354,24985906-24985977,
           24986612-24986782,24987464-24987653,24987733-24987976,
           24988162-24988474,24988687-24989517,24989628-24989672,
           24989677-24989790,24989877-24990371,24990627-24990824,
           24990902-24991357
          Length = 1148

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
 Frame = -3

Query: 506 GHLFVPPLSPFRASIAAVIACFCLEVNTISPSKCSPNSPMTPSE*SIKNLSSEIGRLVTA 327
           G LF     P R  ++    CF +  +    ++   +  M  SE + KN   E  R +  
Sbjct: 294 GDLFFLSTQPLRGQLSG---CFGIATDVGCDNQFQRSFKMLVSE-NQKNTDLESIRYICF 349

Query: 326 ITNVP---KITKSIL*IFNVRCTLLSNCVRKTVRLMLHCAQLVLCAF*ITAS 180
           +TN+     I+K+++ + + RC ++++ +R+  +    CA   LCAF I  S
Sbjct: 350 LTNIMDNLNISKAMVTMSSGRCGIINSIIRRNEKCKKTCACAELCAFGIEDS 401


>11_06_0557 -
           24955837-24956214,24957225-24957395,24957576-24957635,
           24958419-24958623,24958710-24958953,24959103-24959394,
           24959734-24960828,24960915-24961409,24961665-24961823,
           24961893-24962387
          Length = 1197

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
 Frame = -3

Query: 506 GHLFVPPLSPFRASIAAVIACFCLEVNTISPSKCSPNSPMTPSE*SIKNLSSEIGRLVTA 327
           G LF     P R  ++    CF +  +    ++   +  M  SE + K    E  R +  
Sbjct: 294 GDLFFLSSQPLRGQLSG---CFGIATDVGCDNQFQRSFKMLVSE-NQKKTDLESIRYICF 349

Query: 326 ITNVP---KITKSIL*IFNVRCTLLSNCVRKTVRLMLHCAQLVLCAF*ITAS 180
           +TN+     I+K+++ + + RC ++++ +R+  +    CA   LCAF I  S
Sbjct: 350 LTNIVDNLNISKAMVTMSSGRCGIINSIIRRNEKCKKTCACAELCAFGIEDS 401


>06_03_0553 - 22048530-22048532,22049733-22050848
          Length = 372

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 414 FEMLSKFTNDSIGIVYKKFVLRNW--QTRNCNY 322
           FEM+  F N + G V K  + R W  Q RN +Y
Sbjct: 45  FEMMQSFLNSADGEVVKSSMARTWVRQVRNLSY 77


>02_01_0046 -
           311752-312138,312220-312372,312458-312653,312702-312792,
           312808-313228
          Length = 415

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 338 LVTAIT-NVPKITKSIL*IFNVRCTLLSNCVRKTVRLMLHCAQLVLCAF 195
           L  A+T  + ++T ++   +   C+LLS+ VR ++R    C QL  CAF
Sbjct: 78  LEVAVTPGIEELTLTLHKKYIFACSLLSDGVRDSIR----CLQLTFCAF 122


>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
          Length = 946

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = +1

Query: 223 CNINLTVFL-TQLLRSVQRTLNIYKMLLVILGTLVIAVTSLPISEDKFFIDYSDGVIGEF 399
           C I + V + T  +  ++  L + ++L V+  +LV A T  P+  D + I     V    
Sbjct: 40  CAIQIEVQISTAKMIKLRSALGVLEILSVLCISLVAAYT--PV--DNYLISCGSSVDTPV 95

Query: 400 GEHF-----EGDMVLTSKQKQAITAAMDARNGLK 486
           G+        G +VLTS    A+ A+  A +GL+
Sbjct: 96  GQRLFVADDSGTVVLTSPASDAVKASPSAVSGLR 129


>10_01_0026 - 351737-353443
          Length = 568

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = -3

Query: 509 FGHLFVPPLSPFRASIAAVIACFCLEVNTISPSKCSPNSPMTPSE 375
           F  LFV  +    A + A++ C C+++         PN P    E
Sbjct: 102 FVGLFVVAMVAVLAGVVAIVVCCCIKITKKKKRPPPPNMPFFTDE 146


>05_04_0137 + 18343106-18344686
          Length = 526

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 234 PYGFPHTVTKKCTTNIEYL*NALSNFGN-IGNCSYESA 344
           P+G  H VT  C   +E+L     NFGN +   S+ +A
Sbjct: 79  PFGAGHAVTTACPAAVEHL--LRGNFGNYVRGASFRAA 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,557,372
Number of Sequences: 37544
Number of extensions: 258237
Number of successful extensions: 586
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)