Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H08
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42914| Best HMM Match : Chlam_PMP (HMM E-Value=3.3e-10)             31   0.74 
SB_4967| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_38248| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)                   28   3.9  
SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_39291| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_42914| Best HMM Match : Chlam_PMP (HMM E-Value=3.3e-10)
          Length = 1211

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 509  FGHLFVPPLSPFRASIAAVIACFCLEV 429
            F HLFV P   F+A++A  ++  CL V
Sbjct: 1089 FHHLFVRPFHDFKANVAEAVSLLCLVV 1115


>SB_4967| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 400 GEHFEGDMVLTSKQKQAITAAMDARNGLKGGTKRWP 507
           G+ FEGD+V+T   +  +      R+G++   K WP
Sbjct: 146 GQLFEGDIVMTEHFRNHVLGNNVKRDGMQDKDKLWP 181


>SB_38248| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)
          Length = 374

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 250 TQLLRSVQRTLNIYKMLLVILGTLVIAVTSLPISEDKFFIDY 375
           T+ LR++QRTL  + +  +   +L+ ++ S+P+      +DY
Sbjct: 119 TRSLRTLQRTLTRHFIRSLAWSSLLTSLVSIPLMVSSLLVDY 160


>SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 238 TVFLTQLLRSVQRTLNIYKMLLVILGTLVIAVTSLPISEDKFF 366
           T+ +  ++ S     N Y + +VIL T+++ + S  +S+  FF
Sbjct: 435 TIIIIIIISSSSIIKNFYSIAIVILITIIVVIISKSVSDAIFF 477


>SB_39291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 229 INLTVF---LTQLLRSVQRTLNIYKMLLVILGTLVIAVTSLPISED 357
           +N  +F   ++ + +    T+N   +LLV+LG L   V S+P   D
Sbjct: 132 LNFAIFEIKVSDVAKKSDSTMNSIPVLLVLLGALTETVLSVPARND 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,168,997
Number of Sequences: 59808
Number of extensions: 317806
Number of successful extensions: 856
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)