Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H08
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astaci...    29   2.0  
AJ561201-1|CAD99204.1|  212|Caenorhabditis elegans NAS-4 protein...    29   2.0  
Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical pr...    28   4.5  
D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.        28   4.5  
Z70683-1|CAA94590.1|  511|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astacin
           protease protein 4 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 400 GEHFEGDMVLTSKQKQAITAAMDARNGLKGGTKRWPN 510
           G + EGD++L S +K         RN +K   +RWPN
Sbjct: 70  GNYSEGDILLESPKKFVEENNKLGRNAIKQIYRRWPN 106


>AJ561201-1|CAD99204.1|  212|Caenorhabditis elegans NAS-4 protein
           protein.
          Length = 212

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 400 GEHFEGDMVLTSKQKQAITAAMDARNGLKGGTKRWPN 510
           G + EGD++L S +K         RN +K   +RWPN
Sbjct: 38  GNYSEGDILLESPKKFVEENNKLGRNAIKQIYRRWPN 74


>Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical
           protein F40E10.1 protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 301 LVILGTLVIAVTSLPISEDKFFIDYSDGVIGEFGEH---FEGDMVLTSKQKQAI 453
           + IL  L   +  +P  ++   +D+ D +  +  E    FEGDMVLT +Q   I
Sbjct: 45  MTILNKLQADILGIPQPDEFSALDFEDKIESKPDEIPYLFEGDMVLTDEQMDLI 98


>D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 301 LVILGTLVIAVTSLPISEDKFFIDYSDGVIGEFGEH---FEGDMVLTSKQKQAI 453
           + IL  L   +  +P  ++   +D+ D +  +  E    FEGDMVLT +Q   I
Sbjct: 45  MTILNKLQADILGIPQPDEFSALDFEDKIESKPDEIPYLFEGDMVLTDEQMDLI 98


>Z70683-1|CAA94590.1|  511|Caenorhabditis elegans Hypothetical
           protein F13B12.1 protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 349 SEDKFFIDYSDGVIGEFGEHFEGDMVLTSKQKQAITAAMDARNGLKGG 492
           S+  +  D  DG +   G HFE D      +K+A       R G  GG
Sbjct: 182 SKPAYDSDDDDGPVDRHGRHFEWDFDKMLAEKKAERKKKTRRGGKDGG 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,117,768
Number of Sequences: 27780
Number of extensions: 247472
Number of successful extensions: 676
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)