Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H08
         (514 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.20 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   5.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = -3

Query: 77  HLNYLRRIPPCSHQDTNMYV 18
           H+++LR +PP SHQ T+++V
Sbjct: 141 HVSFLRTVPPYSHQ-TDVWV 159


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 250 TQLLRSVQRTLNIYKMLLVILGTLVIAVTSLPISE--DKFFIDYSDGVIGEFGEHFEGDM 423
           +QL+ +++  L I   L+     L +  T+    +  DK++ +Y    +GE    F G  
Sbjct: 366 SQLIDTLENVLAIVDRLMDETNQLTLQETADAFKDLQDKYYEEYKMYELGELASSFVGPK 425

Query: 424 V 426
           V
Sbjct: 426 V 426


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
          protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 12 LSDIHVGVLMRA 47
          LSD+H G+L++A
Sbjct: 43 LSDVHTGILIKA 54


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 217 PNWSFAPFK 191
           P+WSFA FK
Sbjct: 109 PDWSFAEFK 117


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = -3

Query: 167 LNDQRDIGNISPN*ITLSTSAYEMKCFLFHHLNYLRRIP 51
           +++  +  N + N    + + Y     L++++NY+ +IP
Sbjct: 90  IHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIP 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,772
Number of Sequences: 438
Number of extensions: 3391
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)