Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H07
(294 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 29 0.11
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 0.43
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 27 0.76
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 0.76
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 27 0.76
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 27 0.76
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 1.8
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 1.8
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 2.3
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 25 2.3
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 25 3.1
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 24 4.0
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 24 5.3
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 23 7.1
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 23 9.3
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 23 9.3
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.11
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -1
Query: 165 AVSHYIVAKHH----RFANASRTLLFIFCLQNKLYYAQVLLCNF 46
A SH V K H R + +LFIFC N++++ + L +F
Sbjct: 136 ASSHKTVTKKHNWMLRLYYGNNKVLFIFCAANEMFFVALYLLSF 179
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.5 bits (58), Expect = 0.43
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +3
Query: 102 ITMSEKHLQTGDVLPQYSGKLRVFAMRFCPYAERT-----VLVLNAKNLQYDLVFIN 257
+ + +LQT +VLP+ + +RF PYA T ++ ++ N+Q DL +N
Sbjct: 448 VVLENLNLQTANVLPKLAEFRNNNFVRFSPYANITSFRENMINVHLSNIQCDLKDVN 504
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 26.6 bits (56), Expect = 0.76
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 117 KHLQTGDVLPQYSGKLRVFAMR 182
K L+TG ++PQ LRVF +R
Sbjct: 15 KRLETGLIIPQLKDILRVFGLR 36
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 26.6 bits (56), Expect = 0.76
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 3 TRFTRQFVI-GCFSKRNCTEE-PVHSTVYFV-NRK*ITMSEKHLQTGD-VLPQYSGKLRV 170
T T Q +I GC C++ V + VYF N++ T + D + YSG L+
Sbjct: 418 TNGTVQLLIPGCTYDNTCSQRGSVIANVYFAKNKQPATKLVQQASDFDQYVSLYSGYLQG 477
Query: 171 FAMRFCPYAE 200
F+ F PY E
Sbjct: 478 FSDNFRPYVE 487
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 0.76
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 143 QNITGLQMLLGHCYLFSVYKINCTMHRF 60
QNI+ Q L+ +L+S + C +H F
Sbjct: 315 QNISSYQRLVSFAHLYSYTSVKCLVHWF 342
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 0.76
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +2
Query: 155 WETACVCYEILSLCRENCISVEREE 229
W T C CY+ C + C+ E ++
Sbjct: 229 WSTVCGCYKNTYTCSQTCLEDEVQD 253
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 1.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 152 ILWQNITGLQMLLGHCYLFSVYKINC 75
++ N+ + +L HC LFS+ I C
Sbjct: 1703 VVEMNLFAMDFILSHCILFSLTPILC 1728
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 1.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 271 GSGSKLMNTKSYCKFFAFNTNTVLSA*GQNLIAN 170
G+ S +MN Y +FF T++ +N+++N
Sbjct: 162 GNSSIIMNAVEYNQFFPLTITTLIVKNNKNVVSN 195
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.0 bits (52), Expect = 2.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 4 RGSHVNL*SAVFLKEIAQKNLCIVQ 78
R +++ S + LKE+AQKNL +Q
Sbjct: 697 RSNNLGRASFIILKELAQKNLARIQ 721
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 25.0 bits (52), Expect = 2.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 168 VFAMRFCPYAERTVLVLNAKNLQYDLVFINL 260
VFA +CPY T V+ K ++ + I+L
Sbjct: 19 VFAKSYCPYCHATEKVIADKKIKAQVYQIDL 49
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 24.6 bits (51), Expect = 3.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 229 TCSMIWCSSTWILNPNGF 282
TCS +W S ++LNP F
Sbjct: 122 TCSPLWISVIYLLNPLTF 139
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 24.2 bits (50), Expect = 4.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 222 AKNLQYDLVFINLDPEP 272
AK +QYD +++NL +P
Sbjct: 3 AKTVQYDNIYLNLSEKP 19
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 23.8 bits (49), Expect = 5.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 210 LVLNAKNLQYDLVFINLDP 266
L +N KNL ++ V NL+P
Sbjct: 681 LFMNTKNLDFNAVIKNLEP 699
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 23.4 bits (48), Expect = 7.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 171 THAVSHYIVAKHHRFANASRTLLF 100
+HA H + HH F N S TL F
Sbjct: 103 SHAYFHALTENHHVFVNCS-TLKF 125
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 237 TASSSRSTLIQFSRH 193
TA+ SRS+ + FSRH
Sbjct: 472 TATGSRSSRLSFSRH 486
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 23.0 bits (47), Expect = 9.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 18 QFVIGCFSKRNCTEEPVHSTVYFVNRK*ITMSEKHLQT 131
Q+VI FSK N TEE + V IT + +
Sbjct: 358 QYVITFFSKPNITEENYNLLTLLVTHIPITTDSSYFNS 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,663
Number of Sequences: 5004
Number of extensions: 25661
Number of successful extensions: 68
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -