Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H07
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0592 - 9687700-9687933,9688515-9688591,9688891-9688999,968... 38 0.001
06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690... 37 0.003
03_02_0591 - 9682476-9682487,9682805-9682885,9683085-9683192,968... 36 0.007
10_08_0724 + 20114796-20115506 32 0.092
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 31 0.21
09_03_0167 + 12965030-12965356,12966100-12966387,12966704-129668... 29 0.65
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 28 1.1
10_02_0177 + 6227583-6227786,6227929-6228434,6228908-6228994,622... 27 2.0
10_08_0723 + 20111974-20112705 26 4.6
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 26 4.6
09_06_0346 + 22435164-22435491,22435990-22436114,22436402-224365... 26 6.1
03_06_0755 - 36029836-36030123,36030352-36030444,36030601-360306... 26 6.1
01_01_1149 - 9134390-9134600,9134732-9134790,9135650-9135724,913... 26 6.1
10_08_0700 + 19969616-19969942,19970044-19970422,19970562-19970665 25 8.0
10_08_0692 + 19918746-19919072,19919419-19919781,19919841-199199... 25 8.0
06_01_0247 + 1863549-1863978,1865001-1865261,1865346-1866221,186... 25 8.0
03_06_0400 + 33673429-33673560,33674611-33674788,33674933-336751... 25 8.0
>03_02_0592 -
9687700-9687933,9688515-9688591,9688891-9688999,
9689162-9689260,9689368-9689454,9689570-9689630,
9689739-9689813,9689936-9689961
Length = 255
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 150 YSGKLRVFAMRFCPYAERTVLVLNAKNLQ--YDLVFINLDPEPEW 278
+ G R++ FCP+A+R ++ N K LQ +LV I+L +P W
Sbjct: 29 FDGTTRLYICYFCPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAW 73
>06_01_0897 -
6903294-6903401,6903781-6903855,6904239-6904379,
6904496-6904646,6905035-6905178,6905276-6905366,
6906071-6906308
Length = 315
Score = 36.7 bits (81), Expect = 0.003
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 186 CPYAERTVLVLNAKNLQYDLVFINLDPEPEWIYHFS 293
CP+ +R +L + K+L YD+ ++L +P+W S
Sbjct: 80 CPFTQRVLLTIEEKHLPYDIKLVDLANKPDWFLKIS 115
>03_02_0591 -
9682476-9682487,9682805-9682885,9683085-9683192,
9683307-9683383,9683495-9683603,9683696-9683794,
9684208-9684294,9684454-9684514,9684646-9684720,
9684826-9684854
Length = 245
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 144 PQYSGKLRVFAMRFCPYAERTVLVLNAKNLQ--YDLVFINLDPEPEW 278
P + G R++ CPYA+R + N K LQ +V I+L P W
Sbjct: 28 PLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIKIVAIDLADRPAW 74
>10_08_0724 + 20114796-20115506
Length = 236
Score = 31.9 bits (69), Expect = 0.092
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 153 SGKLRVFAMRFCPYAERTVLVLNAKNLQYDLVFINL 260
SG+L++ + PYA R +VLN K+L Y+ V NL
Sbjct: 4 SGELKLLGVWSSPYAIRVRVVLNLKSLPYEYVEENL 39
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 30.7 bits (66), Expect = 0.21
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 159 KLRVFAMRFCPYAERTVLVLNAKNLQYDLVFINL 260
KLRV+ M R VLN K L +DLV ++L
Sbjct: 7 KLRVYGMALSANVVRVATVLNEKGLDFDLVPVDL 40
>09_03_0167 +
12965030-12965356,12966100-12966387,12966704-12966826,
12967229-12967611,12967863-12968190,12968324-12968353,
12968837-12968989,12969510-12969815
Length = 645
Score = 29.1 bits (62), Expect = 0.65
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 60 EPVHSTVYFVNRK*ITMSEKHLQTGDVLPQYSGKLRVFAMRF--CPYAERTVLVLNAKN 230
+PV+ T + + I +S LQ G +GK +V A F PY L+LN +N
Sbjct: 542 QPVYQTCRLLTMQRINLSSCRLQLGSTEESSNGKCQVPASFFPARPYRHGVPLLLNIRN 600
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 229 TCSMIWCSSTWILNPNGFTI 288
T S IW +S W L P+ FT+
Sbjct: 325 TSSSIWSTSKWTLKPDAFTL 344
>10_02_0177 +
6227583-6227786,6227929-6228434,6228908-6228994,
6229103-6229159,6230814-6231052,6231171-6231289,
6231377-6231463,6231823-6231855
Length = 443
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 129 FANASRTLLFIFCLQNKLYYAQVLLCNFF*KNSRLQIDV*TSC 1
F S + CL+ YYA +L+ KN+RLQ+D+ + C
Sbjct: 225 FVKLSLVSAIMICLEF-WYYAALLILVGLLKNARLQLDIMSIC 266
>10_08_0723 + 20111974-20112705
Length = 243
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 159 KLRVFAMRFCPYAERTVLVLNAKNLQYDLV 248
+L++ + PY R +VLN K L Y+ V
Sbjct: 10 ELKLLGVWDSPYVNRVQIVLNLKGLSYEYV 39
>09_04_0634 -
19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 140 NITGLQMLLGHCYLFSVYKINCTMH 66
N+TG+Q++ G+C V INC H
Sbjct: 165 NVTGVQVITGYCSEAGV--INCASH 187
>09_06_0346 +
22435164-22435491,22435990-22436114,22436402-22436514,
22436919-22437023,22437147-22437531,22437645-22437776,
22437980-22438450,22438550-22439278,22439579-22439767
Length = 858
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 132 GDVLPQYSGKLRVFAMRFCPY 194
G+ P+YS KL + A+R C Y
Sbjct: 737 GEWPPEYSKKLAILALRCCRY 757
>03_06_0755 -
36029836-36030123,36030352-36030444,36030601-36030676,
36030755-36030880,36030957-36031013,36031132-36031253
Length = 253
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -1
Query: 231 SSSRSTLIQFSRHKDRIS*QTHA--VSHY 151
S+SRS I F+ +K R+ +THA + H+
Sbjct: 179 SASRSGFIDFNANKKRVKARTHAPNIDHF 207
>01_01_1149 -
9134390-9134600,9134732-9134790,9135650-9135724,
9135815-9135934,9136012-9136183,9136277-9136335,
9136516-9136572,9136900-9136998,9137088-9137114,
9137607-9137649,9137779-9138023
Length = 388
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 292 LKW*IHSGSGSKLMNT-KSYCKFFAFNTNT 206
L W + +G G L++T S+CK F F NT
Sbjct: 334 LPWLVDAG-GCVLLDTFVSFCKLFTFRANT 362
>10_08_0700 + 19969616-19969942,19970044-19970422,19970562-19970665
Length = 269
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 159 KLRVFAMRFCPYAERTVLVLNAKNLQYDLV 248
+L++ M P+A R L L+ K L YD V
Sbjct: 7 ELKLLGMWASPFALRAKLALSFKGLSYDYV 36
>10_08_0692 +
19918746-19919072,19919419-19919781,19919841-19919977,
19920298-19920304
Length = 277
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 159 KLRVFAMRFCPYAERTVLVLNAKNLQYDLV 248
+L++ M P+A R L L+ K L YD V
Sbjct: 7 ELKLLGMWASPFALRAKLALSFKGLSYDYV 36
>06_01_0247 +
1863549-1863978,1865001-1865261,1865346-1866221,
1866344-1866813
Length = 678
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 179 HSKHTQFPTILWQNITGLQMLLGH 108
HSK P+++ QNI+ ++LL H
Sbjct: 528 HSKKANKPSVVHQNISAEKILLDH 551
>03_06_0400 +
33673429-33673560,33674611-33674788,33674933-33675100,
33675207-33675382,33675508-33675666,33676093-33676230,
33676294-33676355,33676509-33676644,33677174-33677268,
33677520-33677635,33677716-33677845,33677938-33677992,
33678065-33678205
Length = 561
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 168 HAVSHYIVAKHHRFANASRTLLFIFCLQNKLYYAQ 64
HA + A HH++ + T+L I+ QN+ +AQ
Sbjct: 369 HAFALTEAALHHQYEGCTATILLIWFDQNEDCFAQ 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,139,025
Number of Sequences: 37544
Number of extensions: 148879
Number of successful extensions: 332
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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