Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H07
(294 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14) 67 3e-12
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 4e-11
SB_31638| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.069
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26) 29 0.49
SB_39407| Best HMM Match : TIG (HMM E-Value=0) 28 1.1
SB_30851| Best HMM Match : C2 (HMM E-Value=0.0042) 27 2.0
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20) 27 3.5
SB_3108| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.0
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 25 8.0
SB_13534| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.0
SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.0
>SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)
Length = 238
Score = 66.9 bits (156), Expect = 3e-12
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = +3
Query: 108 MSEKHLQTGDVLPQYSGKLRVFAMRFCPYAERTVLVLNAKNLQYDLVFINLDPEPEW 278
M + HL GD P KLR+++MRFCPYAER LVL AK + Y+ + INL +P+W
Sbjct: 1 MPQSHLSNGDPRPPPGDKLRLYSMRFCPYAERPRLVLAAKGVDYECININLKNKPDW 57
>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 62.9 bits (146), Expect = 4e-11
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +3
Query: 102 ITMSEKHLQTGDVLP-QYSGKLRVFAMRFCPYAERTVLVLNAKNLQYDLVFINLDPEPEW 278
ITM H+ G P + KLR+++MRFCP+AER LVL AK L Y+ V +NL +PEW
Sbjct: 9 ITMPVTHISKGSSRPAKPQNKLRLYSMRFCPFAERPRLVLAAKGLDYECVNVNLKSKPEW 68
>SB_31638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1526
Score = 32.3 bits (70), Expect = 0.069
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 102 ITMSEKHLQTGDVLPQYSGKLRVFAMRFCPYAERTVLVLNAKNLQYDLVFINLDPEPE 275
IT+++K+LQ L ++SG L + + L++ +L D +F N+D +P+
Sbjct: 860 ITITKKYLQEVSDLSEFSGNLDTSGLPSLHWVMALNLIVTKTHLMLDKLFGNIDEDPD 917
>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
Length = 492
Score = 29.5 bits (63), Expect = 0.49
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 183 FCPYAERTVLVLNAKNLQYDLVFIN-LDPEPEWI 281
FCP+A+R + + AK +++ + N + PEW+
Sbjct: 269 FCPFAQRAWIAMLAKKAEFEYIEQNPYNKTPEWL 302
>SB_39407| Best HMM Match : TIG (HMM E-Value=0)
Length = 1710
Score = 28.3 bits (60), Expect = 1.1
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = -2
Query: 83 INCTMHRFFCAISFRKTADYKLTCEPR 3
+NC+ HR+ ++ ++ + ++TC+PR
Sbjct: 64 LNCSSHRYGISLDASRSTNGRVTCKPR 90
>SB_30851| Best HMM Match : C2 (HMM E-Value=0.0042)
Length = 889
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 132 GDVLPQYSGKLRVFAMRFCPYAERTVLVLNAKNLQYDLVFI 254
G V PQ + ++R P A+ + VLNA+ + +DLVF+
Sbjct: 476 GLVPPQPRSTTGLISVRGTP-AKNVITVLNAERVWFDLVFV 515
>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1002
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 15 RQFVIGCFSKRNCTEEPVHSTVYFVNRK*ITMSEKHLQTGDVLPQ 149
R F + CFSK C PV FV+ + I +K + D++PQ
Sbjct: 682 RCFGVACFSKHLCEPVPVPHP-QFVSSQ-IAFLDKTSRRDDIIPQ 724
>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
Length = 1037
Score = 26.6 bits (56), Expect = 3.5
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +3
Query: 168 VFAMRFCPYAERTVLVLNAKNLQYDLVFINL 260
+F+ FCP+ ++ + + N+QY + ++L
Sbjct: 581 IFSKSFCPFCKKVKAIFESINVQYTAMELDL 611
>SB_3108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 118 SICKPVMFCHNIVGNCVCLL 177
SIC FC +G+C C L
Sbjct: 125 SICHKNAFCDKTIGSCTCSL 144
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 288 NGKSIRVQDPS**TPNHTASSSRSTLIQFSRHKDRIS*QTHAVSHYIVA 142
+G + Q S TPN T S + S+++ SR + + TH V+ VA
Sbjct: 968 SGSPCKKQPVSPSTPNTTTSDTSSSVLNTSRGEVAANSPTHPVTTSAVA 1016
>SB_13534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 102 ITMSEKHLQTGDVLPQYSGKLRVFAMRFC 188
I + K QT DVLP GK ++ FC
Sbjct: 171 IQVPNKREQTNDVLPLKPGKQKISESVFC 199
>SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/62 (22%), Positives = 26/62 (41%)
Frame = +3
Query: 45 RNCTEEPVHSTVYFVNRK*ITMSEKHLQTGDVLPQYSGKLRVFAMRFCPYAERTVLVLNA 224
RNC++ VH ++++ KH + PQ K + F +C + + + L
Sbjct: 469 RNCSQRSVHENWQIFKTTILSLANKHYPVKILKPQ--RKNQWFDRPYCVHVVKNIAYLKG 526
Query: 225 KN 230
N
Sbjct: 527 LN 528
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,017,390
Number of Sequences: 59808
Number of extensions: 193056
Number of successful extensions: 353
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 326952314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -