Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H06
(583 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 208 3e-54
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_24942| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 6.4
SB_35307| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_21806| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_11080| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_10717| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_57450| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_43959| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_33124| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_4011| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 208 bits (508), Expect = 3e-54
Identities = 99/161 (61%), Positives = 122/161 (75%)
Frame = +3
Query: 99 EDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKE 278
+D K+P VPE++ + L ++ KRKEIFKRAE+YVKEYR KE
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62
Query: 279 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 458
DE+R+ + A+ GN+YVP EA+LAFVIRIRG+N VSPKVRK+LQL RLRQINNGVFVRL
Sbjct: 63 VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122
Query: 459 NKATVNMLRIAEPYIAWGYPKLKSVRELVYKRGFGKLNGKR 581
NKAT NMLRI +PYIA+GYP LKSVREL+YKRG+GK++ +R
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQR 163
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2
Query: 582 HASRSVCRNRVCTPTLGHSSTWGSPMQYRAQRYEACSLWPC*DERTRRC 436
HA V R P +S + +P Q ++RY A S PC ER C
Sbjct: 586 HAPSQVNSERYNAPNQVNSERYNAPSQVNSERYNAPSQSPC-TERYTPC 633
>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 201 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 326
R + +R+EI++R E Y + + R+ RL R R Y
Sbjct: 27 RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68
>SB_24942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 4.8
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 298 QDRLVTVAIIMCPVKLN*HLSSVFVVSTKYHPRYARYCSCSGCVRSTTACSFVSTRPQ*T 477
QDRL I+ P + + +F S K PR A CS + + S T + +T +
Sbjct: 8 QDRLAGRRIVAQPSAI---AAFLFATSFKGEPRAAAKCSLNRLLTSWTEGTRHTTLSETF 64
Query: 478 CFVSLSPI-LHGATPS 522
F LS HGA PS
Sbjct: 65 AFARLSRFHQHGAYPS 80
>SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 590
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 355 LSSVFVVSTKYHPRYARYCSCSGCVRS 435
L S+FV +T RY YC+C G + S
Sbjct: 286 LGSIFVWATGNGGRYNDYCNCDGYITS 312
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 291 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRK 404
RL R + R NYY+ + +AF + I V + P R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923
>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +3
Query: 204 SASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQAR 311
S +KRK +FK ++ K+ ++++ D +++ Q +
Sbjct: 802 STETRKRKHVFKSGDRTAKKRKLEDNDHEKISTQVK 837
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 273 KERDEIRLARQARNRGNYYVP 335
K RD +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503
>SB_35307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 298 QDRLVTVAIIMCPVKLN*HLSSVFVVSTKYHPRYARYCSCSGCVRSTTACSFVSTRPQ*T 477
QDRL I+ P + + +F S K PR A CS + + S T + +T +
Sbjct: 8 QDRLGRRRIVAQPSAI---AAFLFATSFKGEPRAAAKCSLNRLLTSWTEGTRHTTLSETF 64
Query: 478 CFVSLSPI-LHGATPS 522
F LS HGA PS
Sbjct: 65 AFARLSRFHQHGAYPS 80
>SB_21806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 298 QDRLVTVAIIMCPVKLN*HLSSVFVVSTKYHPRYARYCSCSGCVRSTTACSFVSTRPQ*T 477
QDRL I+ P + + +F S K PR A CS + + S T + +T +
Sbjct: 36 QDRLGRRRIVAQPSAI---AAFLFATSFKGEPRAAAKCSLNRLLTSWTEGTRHTTLSETF 92
Query: 478 CFVSLSPI-LHGATPS 522
F LS HGA PS
Sbjct: 93 AFARLSRFHQHGAYPS 108
>SB_11080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 298 QDRLVTVAIIMCPVKLN*HLSSVFVVSTKYHPRYARYCSCSGCVRSTTACSFVSTRPQ*T 477
QDRL I+ P + + +F S K PR A CS + + S T + +T +
Sbjct: 33 QDRLGRRRIVAQPSAI---AAFLFATSFKGEPRAAAKCSLNRLLTSWTEGTRHTTLSETF 89
Query: 478 CFVSLSPI-LHGATPS 522
F LS HGA PS
Sbjct: 90 AFARLSRFHQHGAYPS 105
>SB_10717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 298 QDRLVTVAIIMCPVKLN*HLSSVFVVSTKYHPRYARYCSCSGCVRSTTACSFVSTRPQ*T 477
QDRL I+ P + + +F S K PR A CS + + S T + +T +
Sbjct: 19 QDRLGRRRIVAQPSAI---AAFLFATSFKGEPRAAAKCSLNRLLTSWTEGTRHTTLSETF 75
Query: 478 CFVSLSPI-LHGATPS 522
F LS HGA PS
Sbjct: 76 AFARLSRFHQHGAYPS 91
>SB_57450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 298 QDRLVTVAIIMCPVKLN*HLSSVFVVSTKYHPRYARYCSCSGCVRSTTACSFVSTRPQ*T 477
QDRL I+ P + + +F S K PR A CS + + S T + +T +
Sbjct: 8 QDRLGRRRIVAQPSAI---AAFLFATSFKGEPRAAAKCSLNRLLTSWTEGTRHTTLSETF 64
Query: 478 CFVSLSPI-LHGATPS 522
F LS HGA PS
Sbjct: 65 AFARLSRFHQHGAYPS 80
>SB_43959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 298 QDRLVTVAIIMCPVKLN*HLSSVFVVSTKYHPRYARYCSCSGCVRSTTACSFVSTRPQ*T 477
QDRL I+ P + + +F S K PR A CS + + S T + +T +
Sbjct: 8 QDRLGRRRIVAQPSAI---AAFLFATSFKGEPRAAAKCSLNRLLTSWTEGTRHTTLSETF 64
Query: 478 CFVSLSPI-LHGATPS 522
F LS HGA PS
Sbjct: 65 AFARLSRFHQHGAYPS 80
>SB_33124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 298 QDRLVTVAIIMCPVKLN*HLSSVFVVSTKYHPRYARYCSCSGCVRSTTACSFVSTRPQ*T 477
QDRL I+ P + + +F S K PR A CS + + S T + +T +
Sbjct: 34 QDRLGRRRIVAQPSAI---AAFLFATSFKGEPRAAAKCSLNRLLTSWTEGTRHTTLSETF 90
Query: 478 CFVSLSPI-LHGATPS 522
F LS HGA PS
Sbjct: 91 AFARLSRFHQHGAYPS 106
>SB_4011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 298 QDRLVTVAIIMCPVKLN*HLSSVFVVSTKYHPRYARYCSCSGCVRSTTACSFVSTRPQ*T 477
QDRL I+ P + + +F S K PR A CS + + S T + +T +
Sbjct: 8 QDRLGRRRIVAQPSAI---AAFLFATSFKGEPRAAAKCSLNRLLTSWTEGTRHTTLSETF 64
Query: 478 CFVSLSPI-LHGATPS 522
F LS HGA PS
Sbjct: 65 AFARLSRFHQHGAYPS 80
>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 201 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 326
R +I +R+E+++R E Y + + R+ R R R Y
Sbjct: 16 RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,481,294
Number of Sequences: 59808
Number of extensions: 372183
Number of successful extensions: 1070
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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