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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H06
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)             177   4e-45
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)             177   4e-45
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila...   176   1e-44
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila...   176   1e-44
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila...   176   1e-44
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)             171   4e-43
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila...    95   4e-20
At1g31820.1 68414.m03908 amino acid permease family protein weak...    31   0.74 
At1g26540.1 68414.m03234 agenet domain-containing protein contai...    29   1.7  
At3g52860.1 68416.m05825 expressed protein                             29   2.3  
At5g45310.1 68418.m05562 expressed protein                             28   4.0  
At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing...    28   5.2  
At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04...    27   6.9  
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu...    27   6.9  
At3g09120.1 68416.m01073 hypothetical protein contains Pfam prof...    27   9.1  
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    27   9.1  

>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 
          Length = 247

 Score =  177 bits (431), Expect = 4e-45
 Identities = 84/153 (54%), Positives = 108/153 (70%)
 Frame = +3

Query: 123 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 302
           VPESV                  +  +  S++ RK IFKRAEQY KEY  K+ + IRL R
Sbjct: 13  VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72

Query: 303 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 482
           +A+ +G +YV  EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 73  EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132

Query: 483 RIAEPYIAWGYPKLKSVRELVYKRGFGKLNGKR 581
           R  EPY+ +GYP LKSV+EL+YKRG+GKLN +R
Sbjct: 133 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQR 165


>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 
          Length = 242

 Score =  177 bits (431), Expect = 4e-45
 Identities = 84/153 (54%), Positives = 108/153 (70%)
 Frame = +3

Query: 123 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 302
           VPESV                  +  +  S++ RK IFKRAEQY KEY  K+ + IRL R
Sbjct: 8   VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67

Query: 303 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 482
           +A+ +G +YV  EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 68  EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127

Query: 483 RIAEPYIAWGYPKLKSVRELVYKRGFGKLNGKR 581
           R  EPY+ +GYP LKSV+EL+YKRG+GKLN +R
Sbjct: 128 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQR 160


>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score =  176 bits (428), Expect = 1e-44
 Identities = 84/160 (52%), Positives = 112/160 (70%)
 Frame = +3

Query: 102 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 281
           +++    VPESV               Q     +  + +KRK IF RA+QY KEY+ KER
Sbjct: 3   EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62

Query: 282 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 461
           + I+L R+A+ +G +YV  EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63  ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122

Query: 462 KATVNMLRIAEPYIAWGYPKLKSVRELVYKRGFGKLNGKR 581
           KAT+NMLR  EPY+ +GYP LKSV+EL+YKRGFGKLN +R
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162


>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score =  176 bits (428), Expect = 1e-44
 Identities = 84/160 (52%), Positives = 112/160 (70%)
 Frame = +3

Query: 102 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 281
           +++    VPESV               Q     +  + +KRK IF RA+QY KEY+ KER
Sbjct: 3   EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62

Query: 282 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 461
           + I+L R+A+ +G +YV  EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63  ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122

Query: 462 KATVNMLRIAEPYIAWGYPKLKSVRELVYKRGFGKLNGKR 581
           KAT+NMLR  EPY+ +GYP LKSV+EL+YKRGFGKLN +R
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162


>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score =  176 bits (428), Expect = 1e-44
 Identities = 84/160 (52%), Positives = 112/160 (70%)
 Frame = +3

Query: 102 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 281
           +++    VPESV               Q     +  + +KRK IF RA+QY KEY+ KER
Sbjct: 3   EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62

Query: 282 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 461
           + I+L R+A+ +G +YV  EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63  ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122

Query: 462 KATVNMLRIAEPYIAWGYPKLKSVRELVYKRGFGKLNGKR 581
           KAT+NMLR  EPY+ +GYP LKSV+EL+YKRGFGKLN +R
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162


>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
          Length = 242

 Score =  171 bits (415), Expect = 4e-43
 Identities = 82/153 (53%), Positives = 107/153 (69%)
 Frame = +3

Query: 123 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 302
           VPESV               Q     +  + + RK IFKRAEQY KEY  KE++ I L R
Sbjct: 8   VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67

Query: 303 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 482
           +A+ +G +YV  EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 68  EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127

Query: 483 RIAEPYIAWGYPKLKSVRELVYKRGFGKLNGKR 581
           R  EPY+ +G+P LKSV+EL+YKRG+GKLN +R
Sbjct: 128 RRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQR 160


>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
           to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
           sapiens]
          Length = 247

 Score = 94.7 bits (225), Expect = 4e-20
 Identities = 49/160 (30%), Positives = 83/160 (51%)
 Frame = +3

Query: 96  KEDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIK 275
           +E++K L  +PE V               +      S   KK+    KR E +V E+R K
Sbjct: 3   EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62

Query: 276 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVR 455
           E D IR+ ++ +   +   P ++ L F+IRI+G N + PK +++L   +L+ +  GVF +
Sbjct: 63  EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122

Query: 456 LNKATVNMLRIAEPYIAWGYPKLKSVRELVYKRGFGKLNG 575
              +    L   +PY+ +GYP  KSV++L+YK+G   + G
Sbjct: 123 ATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEG 162


>At1g31820.1 68414.m03908 amino acid permease family protein weak
           similarity to asc-type amino acid transporter 2 [Mus
           musculus] GI:18148438; contains Pfam profile PF00324:
           Amino acid permease
          Length = 482

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = -3

Query: 281 TLLDAVFFDILFGSLKDFFPLLNGSGT-PLECDLKT 177
           TL  A+ + ++F +L +F PLL+G+G  PL+ +L T
Sbjct: 245 TLPKALCYGVIFVALSNFLPLLSGTGAIPLDRELWT 280


>At1g26540.1 68414.m03234 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 695

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 391 GDTWLTPRIRMTNASLASPGT 329
           G TW+ P I  +N S+ SPGT
Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158


>At3g52860.1 68416.m05825 expressed protein 
          Length = 156

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 192 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 290
           LK +   IKK   +F+ +++ VKE   K RDE+
Sbjct: 121 LKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153


>At5g45310.1 68418.m05562 expressed protein
          Length = 352

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 222 RKEIFKRAEQYVKEYRIKERD 284
           RKEI K   + +KEYRI E+D
Sbjct: 107 RKEIEKNLREAIKEYRIMEQD 127


>At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing
           protein / CBS domain-containing protein similar to
           SP|Q47334 Polysialic acid capsule expression protein
           kpsF {Escherichia coli}; contains Pfam profiles PF01380:
           sugar isomerase (SIS) domain, PF00571: CBS domain
          Length = 350

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 344 SFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLE 192
           +F  + +  T+ SLS +S F++ LDA+  DI   S +D     + SG   E
Sbjct: 80  AFVANKVSQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEE 130


>At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 579

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 225 KEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRK 404
           KEI ++ +  V E  IK +D  +  R+  +RG Y          V++I    Q+  + R+
Sbjct: 295 KEIVRKIKMLVTEPEIKPQDGFKYRREEFDRGWYDCLKSLSSLEVLKIFAFTQLEDRSRE 354

Query: 405 V 407
           +
Sbjct: 355 I 355


>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to X4 protein GI:21386798,
           Y4 protein GI:21386800 from  [Silene dioica]; contains
           Pfam profiles PF00300: phosphoglycerate mutase family,
           PF01535: PPR repeat
          Length = 1053

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 149 TVLQD*FRNSWQLLTVLFTLHRFFLGRSLLFCS 51
           TVLQ  +RN WQ+  +  T H   L +  LFCS
Sbjct: 375 TVLQHSWRNGWQIKRMNDTAH-LRLFKKALFCS 406


>At3g09120.1 68416.m01073 hypothetical protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674)
          Length = 333

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 314 VTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLECDLK 180
           V  +SC+S FI   D     ++  S+ +   +LNG G P   DLK
Sbjct: 137 VVFVSCRSSFILTDD---LKVMLNSIDEIVKVLNGLGYPNINDLK 178


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +3

Query: 195 KRRSASIKKRKEIFKRAEQYVK----EYRIKERDEI-RLARQARNR 317
           KRR    +KR+E  KR E+  K    E + KER+E+ R  R+ + R
Sbjct: 556 KRREEEARKREEERKREEEMAKRREQERQRKEREEVERKIREEQER 601


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,519,041
Number of Sequences: 28952
Number of extensions: 244660
Number of successful extensions: 585
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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