BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0002_H06 (583 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 177 4e-45 At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 177 4e-45 At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 176 1e-44 At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 176 1e-44 At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 176 1e-44 At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 171 4e-43 At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 95 4e-20 At1g31820.1 68414.m03908 amino acid permease family protein weak... 31 0.74 At1g26540.1 68414.m03234 agenet domain-containing protein contai... 29 1.7 At3g52860.1 68416.m05825 expressed protein 29 2.3 At5g45310.1 68418.m05562 expressed protein 28 4.0 At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing... 28 5.2 At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04... 27 6.9 At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu... 27 6.9 At3g09120.1 68416.m01073 hypothetical protein contains Pfam prof... 27 9.1 At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 27 9.1 >At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) Length = 247 Score = 177 bits (431), Expect = 4e-45 Identities = 84/153 (54%), Positives = 108/153 (70%) Frame = +3 Query: 123 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 302 VPESV + + S++ RK IFKRAEQY KEY K+ + IRL R Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72 Query: 303 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 482 +A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNML Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132 Query: 483 RIAEPYIAWGYPKLKSVRELVYKRGFGKLNGKR 581 R EPY+ +GYP LKSV+EL+YKRG+GKLN +R Sbjct: 133 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQR 165 >At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) Length = 242 Score = 177 bits (431), Expect = 4e-45 Identities = 84/153 (54%), Positives = 108/153 (70%) Frame = +3 Query: 123 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 302 VPESV + + S++ RK IFKRAEQY KEY K+ + IRL R Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67 Query: 303 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 482 +A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNML Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127 Query: 483 RIAEPYIAWGYPKLKSVRELVYKRGFGKLNGKR 581 R EPY+ +GYP LKSV+EL+YKRG+GKLN +R Sbjct: 128 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQR 160 >At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from [Arabidopsis thaliana] Length = 244 Score = 176 bits (428), Expect = 1e-44 Identities = 84/160 (52%), Positives = 112/160 (70%) Frame = +3 Query: 102 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 281 +++ VPESV Q + + +KRK IF RA+QY KEY+ KER Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62 Query: 282 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 461 + I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122 Query: 462 KATVNMLRIAEPYIAWGYPKLKSVRELVYKRGFGKLNGKR 581 KAT+NMLR EPY+ +GYP LKSV+EL+YKRGFGKLN +R Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162 >At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from [Arabidopsis thaliana] Length = 244 Score = 176 bits (428), Expect = 1e-44 Identities = 84/160 (52%), Positives = 112/160 (70%) Frame = +3 Query: 102 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 281 +++ VPESV Q + + +KRK IF RA+QY KEY+ KER Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62 Query: 282 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 461 + I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122 Query: 462 KATVNMLRIAEPYIAWGYPKLKSVRELVYKRGFGKLNGKR 581 KAT+NMLR EPY+ +GYP LKSV+EL+YKRGFGKLN +R Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162 >At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from [Arabidopsis thaliana] Length = 244 Score = 176 bits (428), Expect = 1e-44 Identities = 84/160 (52%), Positives = 112/160 (70%) Frame = +3 Query: 102 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 281 +++ VPESV Q + + +KRK IF RA+QY KEY+ KER Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62 Query: 282 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 461 + I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122 Query: 462 KATVNMLRIAEPYIAWGYPKLKSVRELVYKRGFGKLNGKR 581 KAT+NMLR EPY+ +GYP LKSV+EL+YKRGFGKLN +R Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162 >At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) Length = 242 Score = 171 bits (415), Expect = 4e-43 Identities = 82/153 (53%), Positives = 107/153 (69%) Frame = +3 Query: 123 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 302 VPESV Q + + + RK IFKRAEQY KEY KE++ I L R Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67 Query: 303 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 482 +A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NML Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127 Query: 483 RIAEPYIAWGYPKLKSVRELVYKRGFGKLNGKR 581 R EPY+ +G+P LKSV+EL+YKRG+GKLN +R Sbjct: 128 RRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQR 160 >At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo sapiens] Length = 247 Score = 94.7 bits (225), Expect = 4e-20 Identities = 49/160 (30%), Positives = 83/160 (51%) Frame = +3 Query: 96 KEDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIK 275 +E++K L +PE V + S KK+ KR E +V E+R K Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62 Query: 276 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVR 455 E D IR+ ++ + + P ++ L F+IRI+G N + PK +++L +L+ + GVF + Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122 Query: 456 LNKATVNMLRIAEPYIAWGYPKLKSVRELVYKRGFGKLNG 575 + L +PY+ +GYP KSV++L+YK+G + G Sbjct: 123 ATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEG 162 >At1g31820.1 68414.m03908 amino acid permease family protein weak similarity to asc-type amino acid transporter 2 [Mus musculus] GI:18148438; contains Pfam profile PF00324: Amino acid permease Length = 482 Score = 30.7 bits (66), Expect = 0.74 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%) Frame = -3 Query: 281 TLLDAVFFDILFGSLKDFFPLLNGSGT-PLECDLKT 177 TL A+ + ++F +L +F PLL+G+G PL+ +L T Sbjct: 245 TLPKALCYGVIFVALSNFLPLLSGTGAIPLDRELWT 280 >At1g26540.1 68414.m03234 agenet domain-containing protein contains Pfam PF05641: Agenet domain Length = 695 Score = 29.5 bits (63), Expect = 1.7 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -1 Query: 391 GDTWLTPRIRMTNASLASPGT 329 G TW+ P I +N S+ SPGT Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158 >At3g52860.1 68416.m05825 expressed protein Length = 156 Score = 29.1 bits (62), Expect = 2.3 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 192 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 290 LK + IKK +F+ +++ VKE K RDE+ Sbjct: 121 LKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153 >At5g45310.1 68418.m05562 expressed protein Length = 352 Score = 28.3 bits (60), Expect = 4.0 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 222 RKEIFKRAEQYVKEYRIKERD 284 RKEI K + +KEYRI E+D Sbjct: 107 RKEIEKNLREAIKEYRIMEQD 127 >At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein similar to SP|Q47334 Polysialic acid capsule expression protein kpsF {Escherichia coli}; contains Pfam profiles PF01380: sugar isomerase (SIS) domain, PF00571: CBS domain Length = 350 Score = 27.9 bits (59), Expect = 5.2 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = -3 Query: 344 SFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLE 192 +F + + T+ SLS +S F++ LDA+ DI S +D + SG E Sbjct: 80 AFVANKVSQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEE 130 >At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04510 : Family of unknown function (DUF577)); common family comprised of At5g37410, At5g37400, At5g37920, At5g37460, At5g37650, At5g37470, At5g37420, At5g37430 Length = 579 Score = 27.5 bits (58), Expect = 6.9 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = +3 Query: 225 KEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRK 404 KEI ++ + V E IK +D + R+ +RG Y V++I Q+ + R+ Sbjct: 295 KEIVRKIKMLVTEPEIKPQDGFKYRREEFDRGWYDCLKSLSSLEVLKIFAFTQLEDRSRE 354 Query: 405 V 407 + Sbjct: 355 I 355 >At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mutase family protein similar to X4 protein GI:21386798, Y4 protein GI:21386800 from [Silene dioica]; contains Pfam profiles PF00300: phosphoglycerate mutase family, PF01535: PPR repeat Length = 1053 Score = 27.5 bits (58), Expect = 6.9 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -3 Query: 149 TVLQD*FRNSWQLLTVLFTLHRFFLGRSLLFCS 51 TVLQ +RN WQ+ + T H L + LFCS Sbjct: 375 TVLQHSWRNGWQIKRMNDTAH-LRLFKKALFCS 406 >At3g09120.1 68416.m01073 hypothetical protein contains Pfam profile PF05056: Protein of unknown function (DUF674) Length = 333 Score = 27.1 bits (57), Expect = 9.1 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 314 VTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLECDLK 180 V +SC+S FI D ++ S+ + +LNG G P DLK Sbjct: 137 VVFVSCRSSFILTDD---LKVMLNSIDEIVKVLNGLGYPNINDLK 178 >At2g18540.1 68415.m02160 cupin family protein contains Pfam profile PF00190: Cupin Length = 707 Score = 27.1 bits (57), Expect = 9.1 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%) Frame = +3 Query: 195 KRRSASIKKRKEIFKRAEQYVK----EYRIKERDEI-RLARQARNR 317 KRR +KR+E KR E+ K E + KER+E+ R R+ + R Sbjct: 556 KRREEEARKREEERKREEEMAKRREQERQRKEREEVERKIREEQER 601 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,519,041 Number of Sequences: 28952 Number of extensions: 244660 Number of successful extensions: 585 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 573 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 585 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1141585696 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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