Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H05
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...    81   9e-17
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    28   0.93 
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    27   2.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.8  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   3.7  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score = 81.4 bits (192), Expect = 9e-17
 Identities = 34/54 (62%), Positives = 48/54 (88%)
 Frame = +3

Query: 261 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDER 422
           MK+++ VTSSRRK RK HF APS +RRVLMSAPLSKELR+++ ++S+P+R+D++
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQ 54



 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = +1

Query: 511 RKFVVYIERIQREKANGASVYVGIQPSKCVIVK 609
           +KF++ IER+ REKANGAS  VGI  SK VI K
Sbjct: 75  KKFLLLIERVTREKANGASAPVGIDASKVVITK 107


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 236  RFTVKKRQNEVQ*ARDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKTKVQRE 394
            R   ++R    Q A++  ++ ++EE  +    HP+ TY  TT    K + +RE
Sbjct: 953  RIEEEERMLAAQRAKEEERERREEEERENDEDHPSRTYKRTTKSITKRQQRRE 1005


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 294 FWTTSRAYCTSFCRFFTVNRKYHVYSPLKFRLLFP 190
           FW     Y  + CRFFTV  +     P  F L+ P
Sbjct: 212 FWIYIIVYAVNMCRFFTVGLQPAADRPGMFILVSP 246


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 445 LRTQPLHFRSSLRIGIDFTLNFCLNSLESGADISTRRM*E 326
           +R QPL FR+ +R  I   L+  +N ++   D+   R  E
Sbjct: 576 MRFQPLFFRTRVRTSISDCLHLLVNRIKQELDLLKTRFTE 615


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 237 GLQ*RNDRMKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQK 383
           GL+   D +++++  T+ +    K HF    +  R+  S P  KE  Q+
Sbjct: 136 GLEESTDNVEWDQFATNEKLFGVKSHFDEDLYTSRIDRSHPKYKEKEQE 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,518
Number of Sequences: 5004
Number of extensions: 46280
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)