Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H05
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                           79   2e-15
12_01_0323 - 2459854-2460306                                           79   3e-15
11_01_0317 - 2365493-2365786,2365825-2365953                           64   6e-11
10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373           30   1.6  
05_01_0227 - 1684597-1684727,1685003-1685100,1685176-1685270,168...    29   3.8  
04_03_0822 - 20054832-20055179,20056794-20056847,20057561-200576...    28   6.7  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 38/53 (71%), Positives = 44/53 (83%)
 Frame = +3

Query: 261 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDE 419
           MK N  VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV+S+PIRKD+
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDD 53



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = +1

Query: 511 RKFVVYIERIQREKANGASVYVGIQPSKCVIVK 609
           R++V+++ERI REK NG++V VGI PSK V+ K
Sbjct: 75  RRWVIHVERITREKVNGSTVNVGIHPSKVVVTK 107


>12_01_0323 - 2459854-2460306
          Length = 150

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 38/53 (71%), Positives = 44/53 (83%)
 Frame = +3

Query: 261 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDE 419
           MK N  VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV+S+PIRKD+
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDD 53



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = +1

Query: 511 RKFVVYIERIQREKANGASVYVGIQPSKCVIVK 609
           R++V+++ERI REK NG++V VGI PSK V+ K
Sbjct: 75  RRWVIHVERITREKVNGSTVNVGIHPSKVVVTK 107


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 32/44 (72%), Positives = 35/44 (79%)
 Frame = +3

Query: 261 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNV 392
           MK N  VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNV 44



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = +1

Query: 511 RKFVVYIERIQREKANGASVYVGIQPSKCVIVK 609
           R++V+++ERI REK NG++V VGI PSK V+ K
Sbjct: 62  RRWVIHVERITREKVNGSTVNVGIHPSKVVVTK 94


>10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373
          Length = 814

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 335 PTSTYVSTTLQRVKTKVQREIYANPQRRAEVQGLGTKGRL 454
           PT   V  TLQ ++T+     + +P R  E++ L T+G +
Sbjct: 736 PTMRQVEITLQLLRTEKMTPSHVSPDRNQEIESLLTQGAI 775


>05_01_0227 -
           1684597-1684727,1685003-1685100,1685176-1685270,
           1685360-1685545,1686185-1686298,1686583-1686684,
           1686811-1687096,1687242-1687291,1687351-1687479,
           1687590-1687724,1688163-1688165
          Length = 442

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 254 RQNEVQ*ARDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKT 379
           + + VQ +RD  QK   E + Q   S   S Y+++T++ VKT
Sbjct: 268 KDSTVQPSRDAKQKPGPEASIQDLASRAASRYMASTVKSVKT 309


>04_03_0822 -
           20054832-20055179,20056794-20056847,20057561-20057657,
           20057752-20057780
          Length = 175

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 550 SHAGSFRCRLQTSLRYTLLPSSCPSHDCDP---VN*SSLRT 437
           +HAGSF+CRL  S  +   PSS P+    P   V  SS RT
Sbjct: 132 THAGSFKCRLHRSSSHG-HPSSSPTAAAAPAAAVQSSSSRT 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,059,871
Number of Sequences: 37544
Number of extensions: 286146
Number of successful extensions: 592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)