Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H05
(609 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 4e-17
SB_12307| Best HMM Match : Death (HMM E-Value=0.00097) 30 1.7
SB_21914| Best HMM Match : Exo_endo_phos (HMM E-Value=6e-05) 29 2.9
SB_8735| Best HMM Match : RVT_1 (HMM E-Value=2.00386e-43) 29 3.9
SB_36855| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_31103| Best HMM Match : CC (HMM E-Value=8.3) 29 3.9
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_28350| Best HMM Match : BTB (HMM E-Value=1.1e-38) 27 9.0
SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 85.0 bits (201), Expect = 4e-17
Identities = 39/53 (73%), Positives = 47/53 (88%)
Frame = +3
Query: 261 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDE 419
MK N V+SSRRK+RK HFSAPS +RR LMSAPLSKELRQK+NV+S+P+RKD+
Sbjct: 1 MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDD 53
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = +1
Query: 511 RKFVVYIERIQREKANGASVYVGIQPSKCVIVK 609
+K+V++I+RIQREKANGA+V VGI PSK IVK
Sbjct: 76 KKWVIHIDRIQREKANGATVSVGIHPSKVEIVK 108
>SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)
Length = 1366
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 257 QNEVQ*ARDVVQKEKQEEAFQC--PFSHPTSTYVSTTLQRVKTKVQR 391
+++++ +DVV++ KQE +C P + PT VS T+Q T QR
Sbjct: 1157 ESDMEVLKDVVEQHKQEIINECSSPQAVPTRDDVSRTIQECITNWQR 1203
>SB_21914| Best HMM Match : Exo_endo_phos (HMM E-Value=6e-05)
Length = 502
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 387 NVKSMPIRKDERKCKGWVRRDD*LTGSQSWLGQELGSRVYRKEVCSLHRKD 539
NV+S+ + DE C + R D L+ +++WL ++ + L RKD
Sbjct: 35 NVRSVAPKIDELDCVAELNRADVLSVTETWLSDDIPDSAVSLQDYILFRKD 85
>SB_8735| Best HMM Match : RVT_1 (HMM E-Value=2.00386e-43)
Length = 661
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = -3
Query: 568 HWLHWLSHAGSFRCRLQTSLRYTLLPSSCPSHDCDPVN*SSLRTQPLHFRSSLRIGID 395
HWL WL H CR++ L +H PV LR + R L IG+D
Sbjct: 524 HWLRWLGHV----CRMENGRIPKDLLYGELAHGSRPVGRPKLRFKDSCKRDMLAIGLD 577
>SB_36855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 336 GCEKGH*NASSCFSFWTTSRAYCTSFCRFFTVNRKYHVY 220
GC++ H F WT SR+ + R T++ K H+Y
Sbjct: 48 GCQENHDPFKYHFGPWTASRSLDYGYTR-MTIHNKTHIY 85
>SB_31103| Best HMM Match : CC (HMM E-Value=8.3)
Length = 93
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 336 GCEKGH*NASSCFSFWTTSRAYCTSFCRFFTVNRKYHVY 220
GC++ H F WT SR+ + R T++ K H+Y
Sbjct: 48 GCQENHDPFKYHFGPWTASRSLDYGYTR-MTIHNKTHIY 85
>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 261 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMP--IRKDE 419
MK + + RK+ K H P HIR+ + + K +R+ N + P IRK +
Sbjct: 1 MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRKSK 54
>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 267 YNKLVTSSRRKNRKRH 314
YNK++ SSRR N KRH
Sbjct: 180 YNKVIGSSRRANWKRH 195
>SB_28350| Best HMM Match : BTB (HMM E-Value=1.1e-38)
Length = 518
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 535 FRCRLQTSLRYTLLPSSCPSHDCDPVN*SSL 443
FR L T T + S+ P H+CDPV S+
Sbjct: 64 FRAMLTTGFAETFM-STIPLHECDPVGVQSI 93
>SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1307
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 324 PSHIRRVLMSAPLSKELRQKFNVKSMPIRKDERKCKGW 437
PS I+R SA S+EL K V + ++K CKGW
Sbjct: 12 PSEIQRKEASA--SRELEAKHTVNFVGMQKLCETCKGW 47
>SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 224 TWYFRFTVKKRQNEVQ*ARDVVQKEK 301
TW++ F K R ++++ +R ++KEK
Sbjct: 31 TWFYYFDEKPRDSDIEASRSQMEKEK 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,171,600
Number of Sequences: 59808
Number of extensions: 349472
Number of successful extensions: 822
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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