Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H05
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...    67   1e-11
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...    67   1e-11
Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...    67   1e-11
Z81487-2|CAB04000.1|  318|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U29244-2|AAC71086.1|  334|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = +3

Query: 261 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDE 419
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR K  ++++PIR D+
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDD 53



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 19/34 (55%), Positives = 28/34 (82%)
 Frame = +1

Query: 493 VAGCTVRKFVVYIERIQREKANGASVYVGIQPSK 594
           V  C  +KFV++I++I REKANG++V++GI PSK
Sbjct: 69  VLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = +3

Query: 261 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDE 419
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR K  ++++PIR D+
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDD 53



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 19/34 (55%), Positives = 28/34 (82%)
 Frame = +1

Query: 493 VAGCTVRKFVVYIERIQREKANGASVYVGIQPSK 594
           V  C  +KFV++I++I REKANG++V++GI PSK
Sbjct: 69  VLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = +3

Query: 261 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDE 419
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR K  ++++PIR D+
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDD 53



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 21/39 (53%), Positives = 30/39 (76%)
 Frame = +1

Query: 493 VAGCTVRKFVVYIERIQREKANGASVYVGIQPSKCVIVK 609
           V  C  +KFV++I++I REKANG++V++GI PSK  I K
Sbjct: 69  VLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITK 107


>Z81487-2|CAB04000.1|  318|Caenorhabditis elegans Hypothetical
           protein C54E10.3 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 315 NASSCFSFWTTSRAYCTSFCRFF 247
           N+SSCF  WT    Y   FC  F
Sbjct: 113 NSSSCFIHWTWVAMYADRFCYIF 135


>U29244-2|AAC71086.1|  334|Caenorhabditis elegans Hypothetical
           protein ZK1248.5 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 438 VRRDD*LTGSQSWLGQELGSRVYRKEVCSL 527
           +R  D  TGS  W+   L +  +R EVC+L
Sbjct: 280 IRSHDQHTGSYGWIRPFLSTMTHRSEVCTL 309


>Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK1098.1 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 278 RDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKTKVQREIYANPQ 412
           RD  +KE+  +     FSH   +    T +    + QR +Y NPQ
Sbjct: 353 RDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYENPQ 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,395,930
Number of Sequences: 27780
Number of extensions: 265846
Number of successful extensions: 601
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)