Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H05
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   7.1  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   9.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   9.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.4  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 249 RNDRMKYNKLVTSSRRKN 302
           +ND ++ +KLV  + RKN
Sbjct: 90  QNDEIQLDKLVEMANRKN 107


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +2

Query: 191 GNNNLNFRGE*TWYFRFTVKKRQNEVQ 271
           G+N L    +  W+  +TV++++ +V+
Sbjct: 125 GDNMLEVSSKMPWFKGWTVERKEGKVE 151


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 161 YFECTIDNNVENIHCSKFRN 102
           YF  TI+  + N+  +K+RN
Sbjct: 306 YFSTTINPILYNVMSAKYRN 325


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +2

Query: 191 GNNNLNFRGE*TWYFRFTVKKRQNEVQ 271
           G+N L    +  W+  +TV++++ +V+
Sbjct: 141 GDNMLEVSSKMPWFKGWTVERKEGKVE 167


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +2

Query: 191 GNNNLNFRGE*TWYFRFTVKKRQNEVQ 271
           G+N L    +  W+  +TV++++ +V+
Sbjct: 198 GDNMLEVSSKMPWFKGWTVERKEGKVE 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,640
Number of Sequences: 438
Number of extensions: 3409
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)