Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H05
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)            86   1e-17
At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...    84   6e-17
At3g48420.1 68416.m05285 haloacid dehalogenase-like hydrolase fa...    29   1.8  
At1g68530.1 68414.m07828 very-long-chain fatty acid condensing e...    28   4.2  
At5g35917.1 68418.m04317 cytochrome P450, putative similar to Cy...    28   5.6  
At1g25450.1 68414.m03160 very-long-chain fatty acid condensing e...    28   5.6  
At1g21410.1 68414.m02679 F-box family protein  similar to SKP1 i...    28   5.6  
At1g69020.1 68414.m07897 prolyl oligopeptidase family protein si...    27   7.4  

>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 39/53 (73%), Positives = 47/53 (88%)
 Frame = +3

Query: 261 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDE 419
           MK+N  V+SSRRKNRK HF+APS +RRVLMS+PLSK+LR K NV+SMPIRKD+
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDD 53



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 18/33 (54%), Positives = 25/33 (75%)
 Frame = +1

Query: 511 RKFVVYIERIQREKANGASVYVGIQPSKCVIVK 609
           RK+V++IERI REK NG++V VG+  S  +I K
Sbjct: 75  RKWVIHIERITREKVNGSTVNVGVNASNVMITK 107


>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 39/53 (73%), Positives = 46/53 (86%)
 Frame = +3

Query: 261 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDE 419
           MKYN  VTSSRRKNRK HF+A S  RRV+MS+PLS +LRQK+NV+SMPIRKD+
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDD 53



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +1

Query: 511 RKFVVYIERIQREKANGASVYVGIQPSKCVIVK 609
           RK+V++IERI REK NG +V VGIQPSK VI K
Sbjct: 75  RKWVIHIERITREKVNGTTVNVGIQPSKVVITK 107


>At3g48420.1 68416.m05285 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P95649 CbbY protein
           {Rhodobacter sphaeroides}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 319

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -3

Query: 523 LQTSLRYTLLPSSCPSHDCD-PVN*SSLRTQPLHFRSSLRIGIDFTLNFCLNSLES 359
           +Q+ L  + +P++ P+       N  SLR +P+ +RSS  +G+  + +  L +L S
Sbjct: 22  IQSKLSPSFIPNAAPAKAVKLRFNGKSLRAKPMVYRSSRSVGVTCSASSSLTTLPS 77


>At1g68530.1 68414.m07828 very-long-chain fatty acid condensing
           enzyme (CUT1) identical to very-long-chain fatty acid
           condensing enzyme (CUT1) GB:AF129511 (required for
           cuticular wax biosynthesis and pollen fertility:
           Millar,A.A., et al., Plant Cell (1999))
          Length = 497

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 429 KGWVRRDD*LTGSQSWLGQELGSRVYRKEVCSLHRKDPA*ESQWSQCVRRYPAF 590
           KG +RR D +       G +  S V++   C+   K P  +  WS C+ RYP F
Sbjct: 441 KGRMRRGDRVWQIAFGSGFKCNSAVWK---CNRTIKTPK-DGPWSDCIDRYPVF 490


>At5g35917.1 68418.m04317 cytochrome P450, putative similar to
           Cytochrome P450 79A2 (SP:Q9FLC8) {Arabidopsis thaliana}
          Length = 490

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 289 DDVTSLLYFILSFLHCKPKIPRLFTSKV*VIVSCVLNVNLP 167
           DD TS+L FIL  L     + R  T K  ++ S   N++LP
Sbjct: 3   DDSTSMLAFILGLLLLSLTMKRKETKKTMLMTSHTRNLSLP 43


>At1g25450.1 68414.m03160 very-long-chain fatty acid condensing
           enzyme, putative nearly identical to fatty acid
           condensing enzyme CUT1 GI:5001734 from [Arabidopsis
           thaliana]
          Length = 492

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 423 KCKGWVRRDD*LTGSQSWLGQELGSRVYRKEVCSLHRKDPA*ESQWSQCVRRYPAF 590
           + +G ++R+D +       G +  S V++   C+   K P  +  WS C+ RYP F
Sbjct: 434 EAQGRMKRNDRVWQIAFGSGFKCNSAVWK---CNRTIKTPT-DGAWSDCIERYPVF 485


>At1g21410.1 68414.m02679 F-box family protein  similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 360

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 315 NASSCFSFWTTSRAYCTSFCR 253
           N S C SF  T+ AY T FCR
Sbjct: 149 NLSGCTSFSDTAIAYLTRFCR 169


>At1g69020.1 68414.m07897 prolyl oligopeptidase family protein
           similar to SP|Q59536 Protease II (EC 3.4.21.83)
           (Oligopeptidase B) {Moraxella lacunata}; contains Pfam
           profiles PF00326: prolyl oligopeptidase family, PF02897:
           Prolyl oligopeptidase, N-terminal beta-propeller domain;
           contains non-consensus GA donor splice site at intron 5
          Length = 757

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 281 DVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKTKVQREIYANPQR 415
           D V   K+E ++   F   T T        +KT++  EI+  P+R
Sbjct: 71  DFVDFLKRENSYSQAFMADTETLRRDLFSEMKTRIPEEIFTPPER 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,423,830
Number of Sequences: 28952
Number of extensions: 238776
Number of successful extensions: 540
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)