Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H04
         (517 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   0.92 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   3.7  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    21   4.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.6  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 211 SYHHEAVGYSASGCKNFG 264
           S+HH+A GY   G +N+G
Sbjct: 190 SFHHDAAGY---GLRNYG 204


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +2

Query: 230 LDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRV 385
           L IV  AA  +     S+   V  G  S ++   +    +RP V  G  PRV
Sbjct: 61  LKIVEMAANGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRV 112


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = -3

Query: 365 LQQTASISSEVHQLRLQPM*YHHRPQRPEIWQCRPKFLQPDALY 234
           L+   +  ++ H+  ++ + ++   Q+PE W+   K   P  +Y
Sbjct: 66  LKNECAKCNDKHKEGIRKVIHYLVKQKPEWWEQLQKKFDPQGIY 109


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 415 LSSGTDGSNDNSRMDPYFNKRPQS 344
           LS+ T  +  N+R  PY  +RP+S
Sbjct: 252 LSTCTRTTLKNNRASPYPMQRPKS 275


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,809
Number of Sequences: 336
Number of extensions: 2343
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)