Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H04
(517 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 215 4e-57
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 137 8e-34
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 130 2e-31
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 121 7e-29
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 118 7e-28
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 117 9e-28
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 101 5e-23
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 85 6e-18
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 50 3e-07
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 33 0.033
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 31 0.14
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.24
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 0.55
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.7
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 26 2.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 3.8
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 26 3.8
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 25 5.1
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 25 5.1
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 5.1
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 25 5.1
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 5.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.9
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 215 bits (524), Expect = 4e-57
Identities = 104/162 (64%), Positives = 129/162 (79%)
Frame = +2
Query: 32 QPQILLLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDG 211
Q +++L+EGTD +QG+ QL+SNINAC V D +RTTLGP G DKL+VD G+ VISNDG
Sbjct: 7 QIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66
Query: 212 ATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIV 391
ATIMKLLDIVHPAAKTLVDIA++QDAEVGDGTTSVV+ AGELL+ R FVE GV +I+
Sbjct: 67 ATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLII 126
Query: 392 RAVRTAAKLAVDKVKELAVTIDKKSPEEQRELLGKCAETAMS 517
R R AA+LAV+K+KE+A+ +D + R+LL KCA TAM+
Sbjct: 127 RGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMN 168
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 137 bits (332), Expect = 8e-34
Identities = 72/152 (47%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Frame = +2
Query: 68 QTQGKPQLI--SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIV 241
Q + KPQ + SNI A + V DA+RT+LGP+GMDK+I G+ +++NDGATI+K L ++
Sbjct: 12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVL 71
Query: 242 HPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLA 421
HPAAK LVD++ +QD E GDGTTSVVILAG +L ++ G+HP VI + + AA
Sbjct: 72 HPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFT 131
Query: 422 VDKVKELAVTIDKKSPEEQRELLGKCAETAMS 517
VD +KE A+ I+ RE L + A T+++
Sbjct: 132 VDCMKENALAIEL----SDRESLLRAATTSLN 159
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 130 bits (313), Expect = 2e-31
Identities = 58/162 (35%), Positives = 102/162 (62%)
Frame = +2
Query: 29 MQPQILLLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISND 208
MQ + ++ ++ G +SNI A + V D +RT LGPR M K+++D G +++ND
Sbjct: 1 MQSPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTND 60
Query: 209 GATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVI 388
G I++ +++ HPAAK+++++A++QD EVGDGTTSV+ILAGE+L P ++ +HP V+
Sbjct: 61 GHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVM 120
Query: 389 VRAVRTAAKLAVDKVKELAVTIDKKSPEEQRELLGKCAETAM 514
+R+ + A + A+ + E+ + ++ E L+ C T +
Sbjct: 121 IRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIRTCIGTKL 162
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 121 bits (291), Expect = 7e-29
Identities = 63/152 (41%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Frame = +2
Query: 65 DQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVH 244
++ G+ N+ A + + V+++LGP G+DK++VD G ++NDGATI+ LLD+ H
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 245 PAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAV 424
PA K LV++A+ QD EVGDGTTSVVI+A ELL+R V+ +HP I+ R A + AV
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 425 DKVKE-LAVTIDKKSPEEQRELLGKCAETAMS 517
+ + L+ ++D +E L A+T+MS
Sbjct: 135 KFMTDVLSCSVDSLG----KESLINVAKTSMS 162
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 118 bits (283), Expect = 7e-28
Identities = 67/159 (42%), Positives = 98/159 (61%), Gaps = 2/159 (1%)
Frame = +2
Query: 47 LLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHS-GKAVISNDGATIM 223
+ E Q +G+ +S+ V D V++TLGP+GMDK++ +S G V++NDGATI+
Sbjct: 8 IFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATIL 67
Query: 224 KLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVR 403
K + + + AAK LV+I+K QD EVGDGTTSV + A ELL++ V +HP+VI+ R
Sbjct: 68 KSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYR 127
Query: 404 TAAKLAVDKVKELAVTIDKKS-PEEQRELLGKCAETAMS 517
A K A+D ++ A +ID S P + R L A T +S
Sbjct: 128 IATKTAIDALR--ASSIDNSSDPAKFRSDLENIARTTLS 164
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 117 bits (282), Expect = 9e-28
Identities = 63/168 (37%), Positives = 104/168 (61%), Gaps = 1/168 (0%)
Frame = +2
Query: 14 IRNIKMQPQILLL-REGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGK 190
+R+ + P IL+ +E + G + S+I A + V + VRT+LGPRG+DK+++ G+
Sbjct: 10 VRDDQGNPFILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGE 69
Query: 191 AVISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVG 370
++NDGATI+ +++ H AK LV ++KSQD E+GDGTT VV+LAG LL++ ++ G
Sbjct: 70 ITVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKG 129
Query: 371 VHPRVIVRAVRTAAKLAVDKVKELAVTIDKKSPEEQRELLGKCAETAM 514
+HP I A ++AV + ++ +D SPE L + A+T++
Sbjct: 130 IHPIRIADGYEKACQVAVKHLDAISDVVD-FSPENTTNLF-RSAKTSL 175
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 101 bits (243), Expect = 5e-23
Identities = 55/159 (34%), Positives = 94/159 (59%), Gaps = 2/159 (1%)
Frame = +2
Query: 47 LLREGTDQTQG-KPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIM 223
L REG QG + +I N NA + + + RT+LGP G +K++V+H + ++ND ATI+
Sbjct: 13 LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATII 72
Query: 224 KLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVR 403
+ L+++HPAAK +VD + Q+ E+GD VV+ GELL + + +G+ P I +
Sbjct: 73 RELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYE 132
Query: 404 TAAKLAVDKVKELAVTIDK-KSPEEQRELLGKCAETAMS 517
A ++ ++E+ DK ++ E ++EL+ K T +S
Sbjct: 133 MALSHTMEVLEEICA--DKIETVESEKELI-KAIRTCIS 168
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 85.0 bits (201), Expect = 6e-18
Identities = 51/157 (32%), Positives = 80/157 (50%)
Frame = +2
Query: 47 LLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMK 226
LL + Q L NI+A + D +++ LGP G K++VD +G ++ DG ++
Sbjct: 4 LLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLT 63
Query: 227 LLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRT 406
+ I +P A + A +QD GDGTTSV +L GELLK+ ++ G+HP +I
Sbjct: 64 EMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNL 123
Query: 407 AAKLAVDKVKELAVTIDKKSPEEQRELLGKCAETAMS 517
A A+ + K E RE+L A+T++S
Sbjct: 124 AKNEALTFLDSF-----KTDFEVDREVLLNVAKTSLS 155
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 49.6 bits (113), Expect = 3e-07
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Frame = +2
Query: 128 AVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDI----VHPAAKTLVDIAKSQDAEV 295
AV TLGP+G + LI G I+ DG T+ + + + + A+ + D+A +
Sbjct: 57 AVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVA 116
Query: 296 GDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKE 439
GDGTT+ +L + V G +P + R + +LAVD V E
Sbjct: 117 GDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGI----QLAVDNVVE 160
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 32.7 bits (71), Expect = 0.033
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Frame = -2
Query: 486 SSLCSSGDFLSIVTANSLTLSTANLAAVRTART------ITLGWTPT-STNGLNLFRSSP 328
SS SS F IV + S+ LST++ + A T I+ PT +TN ++ ++P
Sbjct: 308 SSTISSSSF--IVESPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTP 365
Query: 327 AKITTDVVPSPTSAS*DLAMSTKVFAAGCTISNSFMMVAPSFEITALPL*STISLSMPLG 148
+T + SPT+ + +++ T S ++ S IT+ S ++ S P+
Sbjct: 366 ENTSTQIT-SPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSS---SVLNSSTPIT 421
Query: 147 PSVVRTASTTSWQALMLDIS 88
S + +ST + +L+ S
Sbjct: 422 SSSILNSSTPITSSTVLNSS 441
Score = 27.5 bits (58), Expect = 1.3
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Frame = -2
Query: 447 TANSLTLSTA-NLAAVRTARTITLGWTP-TSTNGLNLFRSSPAKITTDVVPSPTSAS*DL 274
++ +T STA N + T+ ++ TP TS+ LN S+P +T + SP S +
Sbjct: 1604 SSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLN--SSTPITSSTALNTSPPITSSTV 1661
Query: 273 AMSTKVFAAGCTISNSFMMVAPSFEITALPL*STISL--SMPLGPSVVRTASTTSWQALM 100
S+ + ++ S + + + ++ P+ S+ +L S P+ S V +ST + +
Sbjct: 1662 VNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 1721
Query: 99 LDIS 88
++ S
Sbjct: 1722 VNTS 1725
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 410 QRYGRLER*L*DGPLLQQTASISSEVHQLRLQPM*YHHR 294
+R LE+ L + Q A + +V QL+L+P YHH+
Sbjct: 444 ERIQALEKQLGEKEAPSQVAGLKQQVEQLKLEPFKYHHQ 482
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.24
Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Frame = -2
Query: 474 SSGDFLSIVTANSLTLSTANLAAVRTARTITLGWTPTSTNGLNLFRSSPAKITT---DVV 304
SS DF S +T S +S++++ + ++ + L + +S + +L SS + +T
Sbjct: 549 SSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSAST 608
Query: 303 PSPTSAS*DLAMSTKVFAAGCTISNSFMMVAPSFEITALPL*STISLSMPLGPSVVRTAS 124
SP+S S ++ S+ + ++ ++S M+ + S + + S+ ++P+ S+ +S
Sbjct: 609 SSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSS 668
Query: 123 T 121
+
Sbjct: 669 S 669
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 28.7 bits (61), Expect = 0.55
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 399 TARTITLGWTPTSTNGLNLFRSSPAKITTDVVPSPTSAS 283
T T+T G+T T T+ + + + TT V+ +PT+ +
Sbjct: 797 TVTTVTTGYTGTETSTVTVIPTGTTGTTTVVIQTPTTVT 835
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.7
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Frame = -2
Query: 447 TANSLTLSTANLAAVRTARTITLGWTPTSTNGLNLFRSSPAKITTDVVPSPTSAS*DLAM 268
T+ +T + T+ ++ TP +++ + S+P T + T+++ L
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYT 541
Query: 267 STKVFAAGCTISNSFMMVAPSFEITALPL*S---TISLSMPLGPSVVRTASTTS 115
ST V + +N + S T+ P+ S TIS S P+ + V T + T+
Sbjct: 542 STPVTSTPLATTN--CTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTT 593
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = -2
Query: 498 HFPRSSLCSSGDFLSIVTANSLTLSTANLAAVRTARTITLGWTPTSTNGLNLFRSSPAKI 319
++P +SL S G+FL TA S + ++A+ + + +++ T ++T+ SS ++
Sbjct: 484 YYPEASLTSFGNFLG--TATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRS 541
Query: 318 TTDVVPSPTSAS 283
+ S S S
Sbjct: 542 GSSSSSSSRSGS 553
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 3.8
Identities = 22/100 (22%), Positives = 38/100 (38%)
Frame = +2
Query: 62 TDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIV 241
T T + SN N+ LV D + P + + + N A+ + +L+
Sbjct: 218 TTSTNTSTVIPSNPNSVFLV-DCTHSQC-PTDLPNIATTQHSLRYLDNASASAITVLERT 275
Query: 242 HPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFV 361
HPAA + + S + D + + + K PFV
Sbjct: 276 HPAASSTMATESSHQSPSADSQAEELSKSQRVAKDDDPFV 315
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 452 IDKKSPEEQRELLGKC 499
IDKKS EE +E +GKC
Sbjct: 1002 IDKKSFEELKEKVGKC 1017
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 162 SMPLGPSVVRTASTTSWQALM 100
S+PL PSVV+ ST S Q L+
Sbjct: 211 SIPLAPSVVQVLSTFSAQELL 231
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 348 NLFRSSPAKITTDVVPSPTSAS*DLAMSTKVFAAGC 241
NLF + PA ++V+ + + + +A TK+F A C
Sbjct: 109 NLFYNEPAIELSNVINNSLAKNSGIAGPTKIFFANC 144
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 204 FEITALPL*STISLSMPLGPSVV 136
F+I L S+I+ S+PL PS++
Sbjct: 252 FQIAGFMLLSSIAASLPLSPSII 274
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 489 RSSLCSSGDFLSIVTANSLTLSTAN 415
+SS+ S D LS+ ANS T+ST+N
Sbjct: 279 QSSIQPSDDPLSLEVANSETVSTSN 303
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 163 VHAPWAKCCADSINNQLAGIDVRYKLRL 80
VH+P AK + + N +GID+ ++L
Sbjct: 287 VHSPEAKVTENDVENVQSGIDIEKTIQL 314
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 8.9
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = -2
Query: 336 SSPAKITTDVVPSPTSAS*DLAMSTKVFAAGCTISNSFMMVAPSFEITALPL*STISLSM 157
SSP+ +T SP+S+S + S+ ++ + S+S + S ++ S+ S S
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 201
Query: 156 PLGPSVVRTASTTS 115
S V S+TS
Sbjct: 202 SSSSSSVPITSSTS 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,659
Number of Sequences: 5004
Number of extensions: 40513
Number of successful extensions: 143
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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