Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H04
(517 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 149 1e-36
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 120 5e-28
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 114 5e-26
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 3e-17
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 65 4e-11
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 9e-11
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 61 6e-10
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 54 7e-08
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 52 2e-07
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 28 5.3
SB_11142| Best HMM Match : DUF473 (HMM E-Value=8) 28 5.3
SB_47035| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_27019| Best HMM Match : rve (HMM E-Value=6.6e-15) 27 9.2
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 27 9.2
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 149 bits (361), Expect = 1e-36
Identities = 72/87 (82%), Positives = 78/87 (89%)
Frame = +2
Query: 32 QPQILLLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDG 211
QP I+LL+EGTD +QG PQLISNI+ACQ + DAVRTTLGPRGMDKLIVD GKA ISNDG
Sbjct: 638 QPGIILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDG 697
Query: 212 ATIMKLLDIVHPAAKTLVDIAKSQDAE 292
ATI+ LLDIVHPAAKTLVDIAKSQDAE
Sbjct: 698 ATIINLLDIVHPAAKTLVDIAKSQDAE 724
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 120 bits (290), Expect = 5e-28
Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Frame = +2
Query: 23 IKMQPQILLLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVD--HSGKAV 196
+ + P + +L +G ++ + + +S+ + D V++TLGP+GMDK++ +G
Sbjct: 1 VSLNP-VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQ 59
Query: 197 ISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVH 376
++NDGATI+K + I +PAAK LV+++K QD EVGDGTTSV +L ELLK V +H
Sbjct: 60 VTNDGATILKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIH 119
Query: 377 PRVIVRAVRTAAKLAVDKVKELAVTIDKKSPEEQRELLGKCAETAMS 517
P+ IV R + K A +K E A PE+ RE L A T +S
Sbjct: 120 PQTIVAGWRKSVK-AAEKALEAAAVDHSSDPEKFREDLMNIARTTLS 165
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 114 bits (274), Expect = 5e-26
Identities = 53/128 (41%), Positives = 86/128 (67%), Gaps = 2/128 (1%)
Frame = +2
Query: 95 SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVHPAAKTLVDIA 274
S+I A + V ++T+LGP+GMDK++V G+ ++NDGATI+ ++++ H AK +V+++
Sbjct: 34 SHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVELS 93
Query: 275 KSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELA--V 448
KSQD E+GDGTT VV+LAG LL+ ++ G+HP I AAK+A++ + +A
Sbjct: 94 KSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDSIADNF 153
Query: 449 TIDKKSPE 472
+DK + E
Sbjct: 154 PVDKDNKE 161
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 85.0 bits (201), Expect = 3e-17
Identities = 37/81 (45%), Positives = 58/81 (71%)
Frame = +2
Query: 197 ISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVH 376
++NDG I++ + + HPAAK++++I+++QD EVGDGTTSV+ILAGE + PF+E +H
Sbjct: 1 MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60
Query: 377 PRVIVRAVRTAAKLAVDKVKE 439
P I+ A R A +D +K+
Sbjct: 61 PTQIIAAYRLAMDDMIDILKQ 81
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 75.8 bits (178), Expect = 2e-14
Identities = 33/70 (47%), Positives = 50/70 (71%)
Frame = +2
Query: 230 LDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTA 409
+ + HPAAK++++I+++QD EVGDGTTSV+ILAGE + PF+E +HP I+ A R A
Sbjct: 209 IQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 268
Query: 410 AKLAVDKVKE 439
+D +K+
Sbjct: 269 MDDMIDILKQ 278
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 64.9 bits (151), Expect = 4e-11
Identities = 36/83 (43%), Positives = 46/83 (55%)
Frame = +2
Query: 269 IAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELAV 448
++K QD EVGDGTTSV +LA ELLK V +HP+ IV R + K A +K E A
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVK-AAEKALEAAA 60
Query: 449 TIDKKSPEEQRELLGKCAETAMS 517
PE+ R+ L A T +S
Sbjct: 61 VDHSSDPEKFRDDLMNIARTTLS 83
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 63.7 bits (148), Expect = 9e-11
Identities = 35/93 (37%), Positives = 54/93 (58%)
Frame = +2
Query: 236 IVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAK 415
I HP A + +A +QD GDGTTS V++ GELLK+ +V G+HPR++ A K
Sbjct: 171 IQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKK 230
Query: 416 LAVDKVKELAVTIDKKSPEEQRELLGKCAETAM 514
A++ ++E+ K S E R+ L A+T++
Sbjct: 231 KALEVLEEV-----KVSREMDRDTLINVAKTSL 258
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 60.9 bits (141), Expect = 6e-10
Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Frame = +2
Query: 80 KPQLI--SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIV 241
KPQ I +NI A + V DA+RT+LGP+GMDK+I +G I+NDGATI KL+D V
Sbjct: 21 KPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI-KLIDTV 75
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 54.0 bits (124), Expect = 7e-08
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDI----VHPAAKTLVDIAKSQD 286
+ DAV TLGP+G + +I G I+ DG T+ K +++ + A+ + D+A + +
Sbjct: 79 LADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAIELKDKYQNIGARLVQDVANNTN 138
Query: 287 AEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVI 388
E GDGTT+ +LA + V G +P+ +
Sbjct: 139 EEAGDGTTTATVLARSIATEGFLHVSKGANPQEV 172
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/83 (25%), Positives = 45/83 (54%)
Frame = +2
Query: 101 INACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVHPAAKTLVDIAKS 280
+ CQ ++ + GP G+D ++ SG +I+N G+ I++ L + +P + +V+ A+S
Sbjct: 6 LQTCQNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEAARS 65
Query: 281 QDAEVGDGTTSVVILAGELLKRL 349
G G + +I+ E+ + +
Sbjct: 66 LSGRTGSGASYFIIILAEIFREI 88
>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/96 (27%), Positives = 46/96 (47%)
Frame = -2
Query: 477 CSSGDFLSIVTANSLTLSTANLAAVRTARTITLGWTPTSTNGLNLFRSSPAKITTDVVPS 298
C + + ++++++A A + +A T T+ TPT++N + + T V+P
Sbjct: 414 CPDATTKDVSSTETVSVTSAPTATLTSAPTATV--TPTASNAFTETTTVTSTTTITVLPQ 471
Query: 297 PTSAS*DLAMSTKVFAAGCTISNSFMMVAPSFEITA 190
PTSAS + S+ TI+ + V PS TA
Sbjct: 472 PTSASSSITPSSTPATGTATIATATYSVPPSVAPTA 507
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 419 AVDKVKELAVTIDKKSPEEQRELLGKCAETAMS 517
A+ ++KELAV + K E R+LL +CA TA+S
Sbjct: 1 AIKRIKELAVHVKKNDAGEMRQLLERCAATALS 33
>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2371
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -3
Query: 368 LLQQTASISSEVHQLRLQPM*YH-HRPQRPEIWQCRPKFLQPD 243
++++T S+ + +R+ PM + ++ R E++ CR +FLQ D
Sbjct: 1445 VVKRTFSMVTAARYVRVNPMTFQGYKQMRVELYGCRQEFLQVD 1487
>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 329 GELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKE 439
GE + PF+E +HP I+ A R A +D +K+
Sbjct: 2 GEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQ 38
>SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 80 KPQLISNINACQLVVDAVRTTLGPRGMD 163
K LIS I C LV +A +T+G +G D
Sbjct: 26 KKDLISEIRHCYLVSNAYPSTVGAKGFD 53
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 218 IMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAG-ELLKRLRPFVEVGVHPRVI-V 391
+MK + KTL++I K A V D T +V I++G +L+ P+ + + +I +
Sbjct: 638 VMKATSGIKKLNKTLMEIKKDVVA-VYDQTKNVTIISGKQLIAIFHPYAKTAQNKTMIMI 696
Query: 392 RAVRTAAKLAVDKVKELAV 448
+R A+ + K K +
Sbjct: 697 IRIRNASIPLIQKAKNFTL 715
>SB_11142| Best HMM Match : DUF473 (HMM E-Value=8)
Length = 151
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +2
Query: 188 KAVISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEV 367
K VI N + K LV+I +++ VG+ + + EL KRLR +EV
Sbjct: 69 KTVIVNPSGKFESRFNFSEETKKLLVNIVRNKWKSVGNQVFAHSKIVPELYKRLRRSIEV 128
>SB_47035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.1 bits (57), Expect = 9.2
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Frame = -2
Query: 375 WTPTSTNGLNLFRSSPAKITTDVVPSPTSAS*DLAMSTKVFAAGCTISNSFMM---VAPS 205
+TP+S + F SS AKI T PS S+ T S++ +M S
Sbjct: 216 FTPSSAKIMTPFTSSRAKIMTPFTPSSAEIMTPFTPSSAKIMTPFTPSSAKIMSPLTTSS 275
Query: 204 FEITALPL*STISLSMPLGPSVVRTAS--TTSWQALM 100
+I + S+ + PL PS + S TTS +M
Sbjct: 276 AKIMSPLTPSSAKIMSPLTPSSAKIMSPLTTSSAKIM 312
>SB_27019| Best HMM Match : rve (HMM E-Value=6.6e-15)
Length = 684
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 155 GMDKLIVDHSGKAVISNDGATIMKLLDIVHPAAKTLVD 268
G+D I DH+ V++N G ++ L I A +TL D
Sbjct: 62 GLDLSISDHANNTVVNNVGRNLVSRLKITF-AGETLQD 98
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 27.1 bits (57), Expect = 9.2
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = -2
Query: 390 TITLGWTPTSTNGLNLFRSSPAKITTDVVPSPTSAS*DLAM---STKVFAAGCTISNSFM 220
T T G TPTST + ++ TT + P+SA D ++ ST T S
Sbjct: 538 TTTSGITPTSTISVTTLTTTRTHTTTSITLHPSSAILDNSLGPASTPRTTISSTTHVSST 597
Query: 219 MVAPSFEI---TALPL*STISLSMPLGPSVVR 133
+A S + TA+ +T++ ++P VV+
Sbjct: 598 PIASSSMVMTPTAINPSATVTTTVPSTSVVVK 629
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,843,386
Number of Sequences: 59808
Number of extensions: 315426
Number of successful extensions: 906
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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