Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H04
(517 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 234 3e-62
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 133 8e-32
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 130 7e-31
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 128 3e-30
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 114 3e-26
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 111 3e-25
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 105 1e-23
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 85 2e-17
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 85 2e-17
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 64 7e-11
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 59 2e-09
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 59 2e-09
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 59 2e-09
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 58 4e-09
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 56 1e-08
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 56 2e-08
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 55 3e-08
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 51 4e-07
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 48 3e-06
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 48 3e-06
At3g32030.1 68416.m04070 terpene synthase/cyclase family protein... 31 0.46
At1g04100.1 68414.m00399 auxin-responsive protein / indoleacetic... 31 0.46
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 30 1.1
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr... 28 3.2
At4g03480.1 68417.m00475 ankyrin repeat family protein contains ... 28 3.2
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c... 28 4.3
At5g14240.1 68418.m01664 expressed protein 27 7.5
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r... 27 7.5
At3g29300.1 68416.m03678 hypothetical protein 27 7.5
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 234 bits (572), Expect = 3e-62
Identities = 114/163 (69%), Positives = 134/163 (82%)
Frame = +2
Query: 29 MQPQILLLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISND 208
MQPQI+LL+EGTD +QGK QL+SNINAC V D VRTTLGPRGMDKLI D G ISND
Sbjct: 5 MQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISND 64
Query: 209 GATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVI 388
GATIMKLLDIVHPAAK LVDIAKSQD+EVGDGTT+VV+LA E LK +PF+E GVH + +
Sbjct: 65 GATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNL 124
Query: 389 VRAVRTAAKLAVDKVKELAVTIDKKSPEEQRELLGKCAETAMS 517
+R+ RTA+ LA+ KVKELAV+I+ KS EE++ LL KCA T +S
Sbjct: 125 IRSYRTASTLAIAKVKELAVSIEGKSVEEKKGLLAKCAATTLS 167
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 133 bits (321), Expect = 8e-32
Identities = 69/151 (45%), Positives = 98/151 (64%)
Frame = +2
Query: 65 DQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVH 244
D+ G+ N+ ACQ V + V+T+LGP G+DK++VD G I+NDGATI+++L++ H
Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEH 72
Query: 245 PAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAV 424
PAAK LV++A+ QD EVGDGTTSVVI+A ELLKR V +HP I+ R A + +
Sbjct: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESC 132
Query: 425 DKVKELAVTIDKKSPEEQRELLGKCAETAMS 517
++E VT K + + L CA+T+MS
Sbjct: 133 KYIEEKLVT---KVEKLGKVPLINCAKTSMS 160
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 130 bits (313), Expect = 7e-31
Identities = 63/160 (39%), Positives = 99/160 (61%)
Frame = +2
Query: 29 MQPQILLLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISND 208
M +L+L + + G NI A + V D +RTTLGPR M K+++D G V++ND
Sbjct: 1 MHAPVLVLSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60
Query: 209 GATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVI 388
G I++ LD+ HPAAK++++++++QD EVGDGTTSV++LAGE+L F+E HP VI
Sbjct: 61 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVI 120
Query: 389 VRAVRTAAKLAVDKVKELAVTIDKKSPEEQRELLGKCAET 508
RA A + ++ + ++A++ID + L+ C T
Sbjct: 121 CRAYIKALEDSIAVLDKIAMSIDINDRSQVLGLVKSCIGT 160
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 128 bits (308), Expect = 3e-30
Identities = 62/141 (43%), Positives = 98/141 (69%)
Frame = +2
Query: 95 SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVHPAAKTLVDIA 274
+NIN+ + V DAVRT+LGP+GMDK+I +G+ +I+NDGATI+ ++++ PAAK LV+++
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVELS 91
Query: 275 KSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELAVTI 454
KSQD+ GDGTT+VV++AG LLK + + G+HP VI ++ A A+D + +AV +
Sbjct: 92 KSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTAMAVPV 151
Query: 455 DKKSPEEQRELLGKCAETAMS 517
+ R+ L K A T+++
Sbjct: 152 EL----TDRDSLVKSASTSLN 168
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 114 bits (275), Expect = 3e-26
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 2/158 (1%)
Frame = +2
Query: 47 LLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHS-GKAV-ISNDGATI 220
+ ++ + +G+ +++ + D V++TLGP+GMDK++ G AV ++NDGATI
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATI 65
Query: 221 MKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAV 400
+K L I +PAAK LVDI+K QD EVGDGTTSVV+LAGELL+ V +HP I+
Sbjct: 66 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGY 125
Query: 401 RTAAKLAVDKVKELAVTIDKKSPEEQRELLGKCAETAM 514
R A++ A + + + + +K + E+ R L K A T +
Sbjct: 126 RMASECARNALLKRVID-NKDNAEKFRSDLLKIAMTTL 162
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 111 bits (267), Expect = 3e-25
Identities = 57/146 (39%), Positives = 87/146 (59%), Gaps = 3/146 (2%)
Frame = +2
Query: 23 IKMQPQIL--LLREGTDQTQGKPQ-LISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKA 193
+ MQP + +L+EG G + +I NI AC+ + RT+LGP GM+K++++H K
Sbjct: 4 MSMQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKL 63
Query: 194 VISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGV 373
++ND ATI+ L+I HPAAK LV AK+Q E+GDG + AGELL+ + +G+
Sbjct: 64 FVTNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGL 123
Query: 374 HPRVIVRAVRTAAKLAVDKVKELAVT 451
HP I+ A AV+ +++L T
Sbjct: 124 HPSEIISGYTKAVSKAVEILEQLVET 149
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 105 bits (253), Expect = 1e-23
Identities = 52/136 (38%), Positives = 90/136 (66%), Gaps = 2/136 (1%)
Frame = +2
Query: 44 LLLREGTDQTQ--GKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGAT 217
++LRE +T+ G +NI A + V +R++LGP+GMDK++ G I+NDGAT
Sbjct: 13 IILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGAT 72
Query: 218 IMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRA 397
I++ +D+ + AK +V++++SQD E+GDGTT VV++AG LL++ ++ G+HP I
Sbjct: 73 ILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEG 132
Query: 398 VRTAAKLAVDKVKELA 445
A+++AV+ ++ +A
Sbjct: 133 YEMASRVAVEHLERIA 148
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 85.4 bits (202), Expect = 2e-17
Identities = 46/138 (33%), Positives = 75/138 (54%)
Frame = +2
Query: 101 INACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVHPAAKTLVDIAKS 280
INA + + D +++ LGP+G K++V SG ++ DG T++K + I +P A + A +
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
Query: 281 QDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELAVTIDK 460
QD GDGTTS VI GEL+K+ ++ G+HPRV+V A + + + +
Sbjct: 83 QDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDNFKTPV-V 141
Query: 461 KSPEEQRELLGKCAETAM 514
E +E+L A T +
Sbjct: 142 MGDEVDKEILKMVARTTL 159
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 85.4 bits (202), Expect = 2e-17
Identities = 46/138 (33%), Positives = 75/138 (54%)
Frame = +2
Query: 101 INACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVHPAAKTLVDIAKS 280
INA + + D +++ LGP+G K++V SG ++ DG T++K + I +P A + A +
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
Query: 281 QDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELAVTIDK 460
QD GDGTTS VI GEL+K+ ++ G+HPRV+V A + + + +
Sbjct: 83 QDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTPV-V 141
Query: 461 KSPEEQRELLGKCAETAM 514
E +E+L A T +
Sbjct: 142 MGDEPDKEILKMVARTTL 159
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 63.7 bits (148), Expect = 7e-11
Identities = 27/72 (37%), Positives = 50/72 (69%)
Frame = +2
Query: 230 LDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTA 409
+D+ + AK +V++++SQD E+GDGTT VV++AG LL++ ++ G+HP I A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 410 AKLAVDKVKELA 445
+++AV+ ++ +A
Sbjct: 61 SRVAVEHLERIA 72
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 58.8 bits (136), Expect = 2e-09
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVHPA----AKTLVDIAKSQD 286
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTN 133
Query: 287 AEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELAVTID 457
GDGTT+ V+LA L+ V G +P +I R + K V ++K+++ ++
Sbjct: 134 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVAELKKMSKEVE 190
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 58.8 bits (136), Expect = 2e-09
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVHPA----AKTLVDIAKSQD 286
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 137
Query: 287 AEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELAVTID 457
GDGTT+ V+LA + V G +P +I R + AK V ++K+++ ++
Sbjct: 138 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVE 194
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 58.8 bits (136), Expect = 2e-09
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVHPA----AKTLVDIAKSQD 286
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 137
Query: 287 AEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELAVTID 457
GDGTT+ V+LA + V G +P +I R + AK V ++K+++ ++
Sbjct: 138 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVE 194
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 58.0 bits (134), Expect = 4e-09
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVHPA----AKTLVDIAKSQD 286
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 133
Query: 287 AEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELAVTID 457
GDGTT+ V+LA + V G +P +I R + AK V+++K ++ ++
Sbjct: 134 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMSKEVE 190
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 56.0 bits (129), Expect = 1e-08
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMK---LLDIVHPAAKTLV-DIAKSQD 286
+ DAV TLGPRG + ++ + VI NDG TI K L D + A TL+ ++A +
Sbjct: 55 LADAVSITLGPRGRNVVLAEKDTIKVI-NDGVTIAKSIELPDTIENAGATLIQEVAIKMN 113
Query: 287 AEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELAVTIDKKS 466
GDGTT+ +ILA E++K + G + + + K V ++ ++ + K+
Sbjct: 114 ESAGDGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVKELVRVLQMKSIPVQGKN 173
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 55.6 bits (128), Expect = 2e-08
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDI---VHPAAKTLV-DIAKSQD 286
+ D V TLGPRG + +++D G + NDG TI + +++ + A L+ ++A +
Sbjct: 68 LADCVGLTLGPRGRN-VVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTN 126
Query: 287 AEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELA 445
GDGTT+ ILA E++K V G +P + R + + ++++++ A
Sbjct: 127 DSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKA 179
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 54.8 bits (126), Expect = 3e-08
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Frame = +2
Query: 116 LVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVHPAAKTLVDIAKSQDAE- 292
+V + TLGP+G + ++ + G I NDG T++K +++ P V + + A+
Sbjct: 61 MVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKT 120
Query: 293 ---VGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELAVTID 457
GDG+T+ +ILA L+ + G +P + R + K V ++K ++ I+
Sbjct: 121 NDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSREIE 178
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 51.2 bits (117), Expect = 4e-07
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVHPA----AKTLVDIAKSQD 286
V +AV+ T+GP+G + +I G I+ DG T+ K + A A+ + +A + +
Sbjct: 53 VAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATN 112
Query: 287 AEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELAVTIDKKS 466
GDGTT +L +L V GV+ + + A V +K AV I +
Sbjct: 113 KVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSDLKSRAVMI--ST 170
Query: 467 PEE 475
PEE
Sbjct: 171 PEE 173
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 48.4 bits (110), Expect = 3e-06
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLD----IVHPAAKTLVDIAKSQD 286
+ DAV+ T+GP+G + +I G ++ DG T+ K ++ I + A + +A + +
Sbjct: 53 LADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATN 112
Query: 287 AEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELA 445
GDGTT +L + V G++ + R + A V +K A
Sbjct: 113 DVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSKA 165
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 48.4 bits (110), Expect = 3e-06
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLD----IVHPAAKTLVDIAKSQD 286
+ DAV+ T+GP+G + +I G ++ DG T+ K ++ I + A + +A + +
Sbjct: 54 LADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATN 113
Query: 287 AEVGDGTTSVVILAGELLKRLRPFVEVGVHPRVIVRAVRTAAKLAVDKVKELA 445
GDGTT +L + V G++ + R ++ A V ++ A
Sbjct: 114 DVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVDTVVTNLQSRA 166
>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
contains Pfam profile: PF01397 terpene synthase family
Length = 604
Score = 31.1 bits (67), Expect = 0.46
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = -1
Query: 295 DLSVLRFGNVDQSFCSRMHYIQQL 224
DL++L+FG + ++C R+HYIQ+L
Sbjct: 277 DLTLLKFGKLSFNYC-RLHYIQEL 299
>At1g04100.1 68414.m00399 auxin-responsive protein / indoleacetic
acid-induced protein 10 (IAA10) identical to SP|Q38828
Auxin-responsive protein IAA10 (Indoleacetic
acid-induced protein 10) {Arabidopsis thaliana}
Length = 261
Score = 31.1 bits (67), Expect = 0.46
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -2
Query: 489 RSSLCSSGDFLSIVTANSLTLSTANLAAVRTARTITLGWTPTSTNGLNLFRSSPAKITTD 310
RSSL SS L+ + + ++ AA R + +GW P T +N + + T+
Sbjct: 59 RSSLSSSSSSLTRESGTKRSADSSPAAASNATRQVAVGWPPLRTYRINSLVNQAKSLATE 118
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 44 LLLREGTDQTQ--GKPQLISNINACQLVVDAVRTTLGPRGMDK 166
++LRE +T+ G +NI+A + V +R++LGP+GM+K
Sbjct: 13 IILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain, weak hit to PF01661: Appr-1-p
processing enzyme family
Length = 912
Score = 28.3 bits (60), Expect = 3.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 160 HAPWAKCCADSINNQLAG 107
H PW++ C D +NN AG
Sbjct: 252 HRPWSRICQDIVNNGKAG 269
>At4g03480.1 68417.m00475 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 617
Score = 28.3 bits (60), Expect = 3.2
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -2
Query: 384 TLGWTPTSTNGLNL-FRSSP--AKITTDVVPSPTSAS*DLAMSTKVFAAGCTISNSFMMV 214
++GW PTS G+ L RS P AK D + + + ++T FAAG TI F
Sbjct: 525 SVGWLPTS--GMTLRSRSEPLDAKKYKDHINALLLVA--TLVATVTFAAGFTIPGGFNSS 580
Query: 213 APSFEITALPL*STI 169
AP+ + L ST+
Sbjct: 581 APNMGMATLADDSTL 595
>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
contains Pfam profile: PF01909 nucleotidyltransferase
domain
Length = 839
Score = 27.9 bits (59), Expect = 4.3
Identities = 25/80 (31%), Positives = 35/80 (43%)
Frame = -2
Query: 462 FLSIVTANSLTLSTANLAAVRTARTITLGWTPTSTNGLNLFRSSPAKITTDVVPSPTSAS 283
F ANSL +T NLA ++ R TP+ T L + K T+ P+ T
Sbjct: 628 FEDSAAANSLPTNTGNLAIAKSVRLDISFKTPSHT---GLQTTQLVKDLTEQFPAAT--- 681
Query: 282 *DLAMSTKVFAAGCTISNSF 223
LA+ K F A T+ S+
Sbjct: 682 -PLALVLKQFLADRTLDQSY 700
>At5g14240.1 68418.m01664 expressed protein
Length = 256
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 214 YHHEAVGYSASGCKNFGRHC 273
YHH A+ + G K+FGR C
Sbjct: 177 YHHGAIKGTHVGLKSFGRRC 196
>At4g29380.1 68417.m04197 protein kinase family protein / WD-40
repeat family protein contains Pfam PF00400: WD domain,
G-beta repeat; contains Pfam PF00069: Protein kinase
domain; contains PF02985: HEAT repeat; similar to
adaptor protein (GI:1817584) [Homo sapiens]; similar to
VPS15 protein (GI:6103009) [Pichia pastoris]
Length = 1494
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 276 LAMSTKVFAAGCTISNSFMMVAPSFEITAL 187
L S +FA GC I+ F+ P FE+ L
Sbjct: 218 LKPSMDIFAVGCVIAELFLEGQPLFELAQL 247
>At3g29300.1 68416.m03678 hypothetical protein
Length = 213
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -2
Query: 438 SLTLSTANLAAVRTARTITLGWTPTS---TNGLNLFRSSPAKITTDVVPSPT 292
+L ++T A RT T+ + TS T+ N+ SSP + T V+ +PT
Sbjct: 40 NLPITTTVSTAARTTTTLNQAISTTSNDNTSPSNINSSSPNPLYTGVIQTPT 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,100,250
Number of Sequences: 28952
Number of extensions: 218610
Number of successful extensions: 620
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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