Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H03
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 91 2e-19
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 88 1e-18
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 85 8e-18
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 80 3e-16
03_02_0207 - 6411324-6412895 28 1.6
10_08_1046 + 22542074-22544749,22544837-22545544 27 2.1
08_02_0180 + 13912769-13913008,13914723-13915006,13915118-139152... 26 6.5
08_01_0325 + 2917942-2918193,2919057-2919340,2919453-2919549,291... 26 6.5
01_06_1308 - 36159406-36159536,36159642-36160616,36161117-361612... 25 8.6
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 90.6 bits (215), Expect = 2e-19
Identities = 40/66 (60%), Positives = 49/66 (74%)
Frame = +3
Query: 105 EIMADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLAS 284
E A + ERTF+ +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY DL
Sbjct: 39 EAHAAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKD 98
Query: 285 RPFFPG 302
RPFF G
Sbjct: 99 RPFFNG 104
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 87.8 bits (208), Expect = 1e-18
Identities = 37/59 (62%), Positives = 47/59 (79%)
Frame = +3
Query: 126 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPG 302
E++F+M+KPDGVQRGL+G II RFEKKGF L G+KF+ QQHY+DL+ +PFFPG
Sbjct: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 60
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 85.4 bits (202), Expect = 8e-18
Identities = 37/59 (62%), Positives = 46/59 (77%)
Frame = +3
Query: 126 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPG 302
E++++M+KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY DL +PFFPG
Sbjct: 3 EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPG 61
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 80.2 bits (189), Expect = 3e-16
Identities = 33/59 (55%), Positives = 46/59 (77%)
Frame = +3
Query: 126 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPG 302
E+TF+M+KPDGVQRGL+G +I RFEKKGF L +K + + ++HY+DL+S+PFF G
Sbjct: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGG 62
>03_02_0207 - 6411324-6412895
Length = 523
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 105 EIMADQRERTFLMVKPDGVQRGLV---GTIIERFEKKGF 212
E+++ Q RTF++ +P GV RG++ +ERF + GF
Sbjct: 64 EVLSRQPTRTFVLRRPGGV-RGVITANPANVERFLRSGF 101
>10_08_1046 + 22542074-22544749,22544837-22545544
Length = 1127
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 126 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFP 299
ER +VK +G G FE KG G +WP ++ + H +L S+P+ P
Sbjct: 195 ERRLSLVKQNGGAPGEFDHNRWLFETKGTYGYG-NAIWPEDDGVAGHPKELMSKPWRP 251
>08_02_0180 +
13912769-13913008,13914723-13915006,13915118-13915214,
13915358-13915393,13916665-13916810,13917002-13917107,
13917358-13917417,13917787-13917876
Length = 352
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 183 IIERFEKKGFKLVGLKFVWPSEEL 254
+IE + G L G++F+W SEE+
Sbjct: 127 MIEIWRAAGMNLDGVEFLWSSEEI 150
>08_01_0325 +
2917942-2918193,2919057-2919340,2919453-2919549,
2919677-2919712,2920570-2920715,2920882-2920987,
2921160-2921219,2921848-2921898
Length = 343
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 183 IIERFEKKGFKLVGLKFVWPSEEL 254
+IE + G L G++F+W SEE+
Sbjct: 131 MIEIWRAAGMNLDGVEFLWSSEEI 154
>01_06_1308 -
36159406-36159536,36159642-36160616,36161117-36161245,
36161403-36161647,36161730-36161881,36161982-36162083
Length = 577
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 225 LKFVWPSEELLQQHYSDLASRPFFP 299
+ FV P+ LLQ H++ L+S + P
Sbjct: 402 VSFVLPARALLQSHFTGLSSGVYAP 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,286,003
Number of Sequences: 37544
Number of extensions: 115482
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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