Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H03
         (302 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43840| Best HMM Match : NDK (HMM E-Value=0)                         96   6e-21
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.18 
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.9  

>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
          Length = 786

 Score = 95.9 bits (228), Expect = 6e-21
 Identities = 44/59 (74%), Positives = 51/59 (86%)
 Frame = +3

Query: 126 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPG 302
           ERTF+MVKPDGVQRGLVG II+RFE+KGFKLV LK V  SEE L++HY+DLA  PF+PG
Sbjct: 127 ERTFIMVKPDGVQRGLVGEIIKRFEQKGFKLVALKMVQESEEHLKKHYADLAHLPFYPG 185



 Score = 82.2 bits (194), Expect = 7e-17
 Identities = 37/59 (62%), Positives = 44/59 (74%)
 Frame = +3

Query: 126 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPG 302
           ERTFLM+KPD V RGL+G II RFEKKGFKLV +KFV  SE+  ++HY  LA   F+ G
Sbjct: 639 ERTFLMIKPDAVSRGLIGEIISRFEKKGFKLVAMKFVKKSEDHFRKHYESLAKLKFYDG 697


>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 15/59 (25%), Positives = 33/59 (55%)
 Frame = +3

Query: 120 QRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFF 296
           Q +RT  +++PD + R    +I+ + ++ GF++   K +  + E  ++ YS+   + FF
Sbjct: 536 QLQRTLALIRPDAL-RSRRESIMSKIQEAGFEIAMSKEMHLTREQAEEFYSEHKDQEFF 593


>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1189

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 205 FFSKRSMIVPTRPR*TPSGLTIRKVLSR*SAIISN*TSHHGSNLSYLVKYHL 50
           F   +  IVP  P   P+GLT++   S  + I+S    HH      ++KY L
Sbjct: 548 FTLSKGGIVPKGP---PTGLTLQAAQSGTALIVSWNPPHHSLANGRIIKYAL 596


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,221,203
Number of Sequences: 59808
Number of extensions: 129400
Number of successful extensions: 211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)