Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H03
         (302 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...    79   6e-16
U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    26   6.0  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    26   6.0  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score = 79.0 bits (186), Expect = 6e-16
 Identities = 35/58 (60%), Positives = 44/58 (75%)
 Frame = +3

Query: 126 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFP 299
           ERTF+ +KPDGV RGLVG II RFE++G+KLV LK +  S+  L+ HY DL  +PFFP
Sbjct: 5   ERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFFP 62


>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 250 SSEGQTNFNPTNLKP 206
           SS GQ  FNPTNL P
Sbjct: 561 SSPGQALFNPTNLYP 575


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 250 SSEGQTNFNPTNLKP 206
           SS GQ  FNPTNL P
Sbjct: 561 SSPGQALFNPTNLYP 575


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,153,937
Number of Sequences: 27780
Number of extensions: 99611
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)