Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H03
         (302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   3.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    20   5.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   5.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   5.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   5.8  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          20   7.7  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 259 CSNSSEGQTNFNPTNLKPFFSKRSMIVPTRP 167
           C   +   T  NP ++K   +   M+VP++P
Sbjct: 379 CDRRNGKTTEENPKSIKSGDAAIVMLVPSKP 409


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 259 CSNSSEGQTNFNPTNLKPFFSKRSMIVPTRP 167
           C   +   T  NP ++K   +   M+ PT+P
Sbjct: 379 CDRRTGKTTEENPKSIKSGDAAIVMLQPTKP 409


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 138 ERFFHVDQP 112
           E F+HVDQP
Sbjct: 40  ELFWHVDQP 48


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 138 ERFFHVDQP 112
           E F+HVDQP
Sbjct: 40  ELFWHVDQP 48


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 207 GFKLVGLKFVWPSE 248
           GF++   K +WPS+
Sbjct: 203 GFRVDAAKHMWPSD 216


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 275 LSVPPVFPW 301
           LS+PP+F W
Sbjct: 29  LSLPPLFGW 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,925
Number of Sequences: 438
Number of extensions: 1274
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)