Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H03
(302 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3, mitoch... 95 8e-21
At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4) ... 89 4e-19
At5g63310.1 68418.m07945 nucleotide diphosphate kinase II, chlor... 87 2e-18
At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1) ... 80 3e-16
At1g17410.1 68414.m02126 nucleoside diphosphate kinase family pr... 38 0.001
At4g22980.1 68417.m03316 expressed protein ; expression supporte... 28 1.0
At5g02190.1 68418.m00140 aspartyl protease family protein contai... 27 3.2
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 26 4.2
At1g22470.1 68414.m02808 expressed protein 26 4.2
At5g12260.1 68418.m01441 expressed protein 26 5.6
At5g07170.1 68418.m00817 hypothetical protein 26 5.6
At3g44330.1 68416.m04763 expressed protein 25 7.4
At5g33240.1 68418.m03931 hypothetical protein 25 9.7
At5g28770.2 68418.m03535 bZIP transcription factor family protei... 25 9.7
At5g28770.1 68418.m03534 bZIP transcription factor family protei... 25 9.7
At3g46970.1 68416.m05100 starch phosphorylase, putative similar ... 25 9.7
>At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3,
mitochondrial (NDK3) identical to Nucleoside diphosphate
kinase III, mitochondrial precursor (NDK III) (NDP
kinase III) (NDPK III) (SP:O49203) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain;
Length = 238
Score = 95.1 bits (226), Expect = 8e-21
Identities = 40/66 (60%), Positives = 52/66 (78%)
Frame = +3
Query: 105 EIMADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLAS 284
E++A + ERTF+ +KPDGVQRGL+ II RFE+KGFKLVG+K + PS++ Q+HY DL
Sbjct: 82 EVLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKE 141
Query: 285 RPFFPG 302
RPFF G
Sbjct: 142 RPFFNG 147
>At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4)
contains Pfam PF00334 : Nucleoside diphosphate kinase
domain; identical to nucleoside diphosphate kinase 4
(GI:11990430) [Arabidopsis thaliana]
Length = 237
Score = 89.4 bits (212), Expect = 4e-19
Identities = 39/66 (59%), Positives = 50/66 (75%)
Frame = +3
Query: 105 EIMADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLAS 284
E +A + ERTF+ +KPDGVQRGL+ II RFE+KG+KLVG+K + PS+ Q+HY DL
Sbjct: 81 EALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKE 140
Query: 285 RPFFPG 302
RPFF G
Sbjct: 141 RPFFNG 146
>At5g63310.1 68418.m07945 nucleotide diphosphate kinase II,
chloroplast (NDPK2) identical to SP|O64903 Nucleoside
diphosphate kinase II, chloroplast precursor (NDK II)
(NDP kinase II) (NDPK II) (NDPK Ia) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain; contains Pfam profile
PF00334: Nucleoside diphosphate kinase
Length = 231
Score = 87.0 bits (206), Expect = 2e-18
Identities = 37/58 (63%), Positives = 47/58 (81%)
Frame = +3
Query: 126 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFP 299
E T++MVKPDG+QRGLVG II RFEKKGFKL+GLK +EL ++HY DL+++ FFP
Sbjct: 84 EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFP 141
>At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1)
identical to identical to Nucleoside diphosphate kinase
I (NDK I) (NDP kinase I) (NDPK I) (SP:P39207)
[Arabidopsis thaliana]; contains Pfam PF00334 :
Nucleoside diphosphate kinase domain;
Length = 169
Score = 79.8 bits (188), Expect = 3e-16
Identities = 34/59 (57%), Positives = 44/59 (74%)
Frame = +3
Query: 126 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPG 302
E+TF+M+KPDGVQRGL+G +I RFEKKGF L GLK + ++HY DL+S+ FF G
Sbjct: 22 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 80
>At1g17410.1 68414.m02126 nucleoside diphosphate kinase family
protein contains Pfam PF00334 : Nucleoside diphosphate
kinase domain; similar to Nucleoside diphosphate kinase
homolog 5 (NDK-H 5) (NDP kinase homolog 5) (nm23-H5)
(Testis-specific nm23 homolog) (Inhibitor of p53-induced
apoptosis-beta) (IPIA-beta) (SP:P56597) {Homo sapiens}
Length = 181
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = +3
Query: 114 ADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPF 293
A ERT M+KPDGV I + GF +V +E Y + +SR F
Sbjct: 29 ASSEERTLAMIKPDGVSGNYTEEIKTIVVEAGFNIVKEMLTQLDKETASAFYEEHSSRSF 88
Query: 294 FP 299
FP
Sbjct: 89 FP 90
>At4g22980.1 68417.m03316 expressed protein ; expression supported
by MPSS
Length = 559
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 174 VGTIIERFEKKGFKLVGLKFVWPSEELLQQ 263
V +I EKKG K +F WPS E+L +
Sbjct: 205 VEEMIRISEKKGIKPQSAEFSWPSTEILSE 234
>At5g02190.1 68418.m00140 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease
Length = 453
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -2
Query: 262 CCSNSSEGQTNFNPTNLKPFFSKRSMIVPTRPR*TPS 152
C S+SS ++F+ ++ S +++++P + R TP+
Sbjct: 21 CVSSSSSSSSSFSFSSFSSSSSSQTLVLPLKTRITPT 57
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 26.2 bits (55), Expect = 4.2
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +3
Query: 228 KFVWPSEELLQQH 266
K++WPS+E+L+ H
Sbjct: 197 KYIWPSDEILKSH 209
>At1g22470.1 68414.m02808 expressed protein
Length = 146
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 280 AKSL*CCCSNSSEGQTNFNPTNLKPFFSKRS 188
AK++ C S SSE +++F+ T + ++S S
Sbjct: 82 AKTMSSCSSASSESESDFSSTAISSYYSSVS 112
>At5g12260.1 68418.m01441 expressed protein
Length = 624
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 120 QRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEEL 254
QRE+T ++V G + + ++ FEK + F+ PS EL
Sbjct: 387 QREKTIILVSLYGADKMFIRNLLCHFEK--LNIQNHIFIGPSSEL 429
>At5g07170.1 68418.m00817 hypothetical protein
Length = 542
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Frame = -2
Query: 298 GKNGRDAKSL*CCCSNSSEGQTNFNP----TNLKPFFSKRSMIVPTRP 167
GKN + A CCS +S T N NLK F + VP P
Sbjct: 319 GKNSKPASCA-RCCSQTSSKLTALNTFCFGANLKKLFEGSKVTVPREP 365
>At3g44330.1 68416.m04763 expressed protein
Length = 565
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 185 HRTFRKKRFQISWIKIRLALGRVAAATLQ*LSVPP 289
H+ +++W + + RV AATL LS PP
Sbjct: 358 HKKINISNSRVAWEHEQFSRLRVTAATLSELSTPP 392
>At5g33240.1 68418.m03931 hypothetical protein
Length = 192
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 170 TTLNTIGLNHKKGSFTLISHYFKLN 96
T + T LNH G F H +K++
Sbjct: 73 TFIETFALNHASGQFRPTGHLYKMS 97
>At5g28770.2 68418.m03535 bZIP transcription factor family protein
similar to seed storage protein opaque-2(bZIP
family)GI:168428 from Zea mays; contains Pfam profile
PF00170: bZIP transcription factor; identical to cDNA
bZIP protein BZO2H3 GI:10954098
Length = 314
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 247 SEGQTNFNPTNLK 209
++G+TN NPTN+K
Sbjct: 141 ADGETNMNPTNVK 153
>At5g28770.1 68418.m03534 bZIP transcription factor family protein
similar to seed storage protein opaque-2(bZIP
family)GI:168428 from Zea mays; contains Pfam profile
PF00170: bZIP transcription factor; identical to cDNA
bZIP protein BZO2H3 GI:10954098
Length = 307
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 247 SEGQTNFNPTNLK 209
++G+TN NPTN+K
Sbjct: 134 ADGETNMNPTNVK 146
>At3g46970.1 68416.m05100 starch phosphorylase, putative similar to
alpha-glucan phosphorylase, H isozyme SP:P32811 from
[Solanum tuberosum]
Length = 841
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +3
Query: 75 RFDPW*LV*FEIMADQRERTFLMVKPDGVQRGLVGTIIE 191
+F PW +V +++ R + V PDG ++ + G +++
Sbjct: 188 KFSPWEIVRHDVVFPVRFFGKVQVNPDGSRKWVDGDVVQ 226
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,864,992
Number of Sequences: 28952
Number of extensions: 94505
Number of successful extensions: 225
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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