Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H02
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    26   0.23 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.53 
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     24   0.70 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   2.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   2.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   2.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   2.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   2.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.1  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   2.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   2.1  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   3.7  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   6.5  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   6.5  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   8.6  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   8.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.6  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +3

Query: 165 SAPTSSPELGAHSRGSPQGAPRRRETSHRITREAANRHPEHTKGEPEPGEGSRRQHGSDL 344
           S  T+SP     S+ SP  APR   T   I   + +  P     + E  +    +   ++
Sbjct: 195 SRTTTSPTKVKASKASPAAAPRSVATPTGIPTPSTSASPPTVNIKKESPQMQSYRPTGNI 254

Query: 345 TETGAKTES 371
           T  G+ T S
Sbjct: 255 TPHGSNTSS 263


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +3

Query: 168 APTSSPELGAHSRGSPQGAPRRRETSHRITREAA 269
           AP   P    H R +    PR     H +TR AA
Sbjct: 313 APRERPRATDHQRRNEPKRPRPNIDRHEVTRPAA 346


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 367 KAAYDDFVKHAEEVQKK 417
           +AAY+D VKH E ++++
Sbjct: 167 RAAYEDIVKHLERLREE 183


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 261 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 350
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 261 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 350
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 261 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 350
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 261 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 350
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 261 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 350
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 261 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 350
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 261 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 350
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 261 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 350
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 83  PTPWCSRSPSYPT 121
           PTP CS + S PT
Sbjct: 192 PTPTCSEASSSPT 204


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 277 IQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAA 375
           +   L  + +    V  N+ +T QK+AP+L  A
Sbjct: 524 LPTVLSMANDKVANVRFNVAKTLQKIAPQLDQA 556


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 273 RHPEHTKGEPEPGEGSRRQHGSDLTE 350
           ++P+H    P PG G +   G D T+
Sbjct: 7   QYPQHPYAAPAPGHGLQPTMG-DYTQ 31


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 179 ACWSTSLALPFASVNAPCRLLDNSETCCTMESEPSFSALFK 57
           A +  SLA   ++ N     L ++  C T+ S P F  LFK
Sbjct: 289 ATFIQSLAPLNSAANPIIYCLFSTHFCRTLGSLPPFKWLFK 329


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 314 FARFWLSFSVFWMAV 270
           FA+FW++ ++F + V
Sbjct: 2   FAKFWVNLALFCLHV 16


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 358 APVSVRSDPC*RRLPSPGSGSPLV 287
           AP+   + P  R +PSP   SP++
Sbjct: 64  APIRPVALPPKREIPSPKRSSPIL 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.124    0.325 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,018
Number of Sequences: 336
Number of extensions: 1924
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)