Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H02
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.81 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   1.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   3.3  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   5.7  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   5.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   10.0 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   10.0 

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 46  NTESLNKALKEGSDSMVQQVSELSNS 123
           NTESL K+  +G+D   ++V ++ +S
Sbjct: 278 NTESLMKSENQGNDVQYERVQDVFDS 303


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 230 SGCALRRSSTVRSKFWRACWSTSLALPFASVNAPCRLLD 114
           +GC L   +  ++K+ RAC + SL L   +     R+LD
Sbjct: 366 AGCDLTIDNLRKAKYLRACITESLRL-IPTTTCIARILD 403


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 78  RLRLHGAAGLRVIQQS 125
           RL++HG  GLRV   S
Sbjct: 564 RLKVHGIRGLRVADAS 579


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +1

Query: 193 ERTVEDLRKAHPDVEKQATALHEKLQTAIQNTLKESQNLAKEV 321
           ++TV+D+ + + DVE +    + +      N + ES N  + +
Sbjct: 41  QQTVDDINEVNFDVEDEKPQRYNECILKQFNIVDESGNFKENI 83


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +1

Query: 193 ERTVEDLRKAHPDVEKQATALHEKLQTAIQNTLKESQNLAKEV 321
           ++TV+D+ + + DVE +    + +      N + ES N  + +
Sbjct: 41  QQTVDDINEVNFDVEDEKPQRYNECILKQFNIVDESGNFKENI 83


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +3

Query: 249 RITREAANRHPEHTKGEPEPGEGSRRQHGSDLTETGAKT 365
           R+T    + H       PEP + S    GS + +    T
Sbjct: 336 RLTAMMHHLHVAKQMASPEPPKSSESSTGSSIPKLNLST 374


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 197 AQSRISARRTPTSRNKPPHYTRSCKPP 277
           AQ R + RRTP   ++     R   PP
Sbjct: 174 AQIRRNERRTPDPHDETAKKPRVLSPP 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.124    0.325 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,991
Number of Sequences: 438
Number of extensions: 2300
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)