Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H01
(381 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukar... 85 6e-16
UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukary... 71 6e-12
UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal ... 71 1e-11
UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magn... 64 1e-09
UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Meta... 58 6e-08
UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;... 56 3e-07
UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN ... 52 3e-06
UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellu... 52 3e-06
UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n... 52 4e-06
UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=... 51 6e-06
UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archa... 49 3e-05
UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila melanogaster|... 48 6e-05
UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiell... 47 1e-04
UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14; Archa... 44 7e-04
UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1; Encepha... 42 0.005
UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9; Euryar... 42 0.005
UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|R... 40 0.016
UniRef50_Q7QNK8 Cluster: ENSANGP00000015156; n=1; Anopheles gamb... 35 0.59
UniRef50_UPI00006A05C0 Cluster: Leukemia inhibitory factor recep... 32 4.2
UniRef50_Q4CQB5 Cluster: Putative uncharacterized protein; n=2; ... 31 5.5
UniRef50_A7TAQ7 Cluster: Predicted protein; n=1; Nematostella ve... 31 9.6
UniRef50_A7S7T2 Cluster: Predicted protein; n=2; Nematostella ve... 31 9.6
UniRef50_Q6L058 Cluster: Molybdopterin (MPT) converting factor, ... 31 9.6
>UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137;
Eukaryota|Rep: 40S ribosomal protein S28 - Homo sapiens
(Human)
Length = 69
Score = 84.6 bits (200), Expect = 6e-16
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +2
Query: 44 KPNVLARVVKVLGRTGSQXQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 196
+P LARV KVLGRTGSQ QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13;
Eukaryota|Rep: 40S ribosomal protein S28 -
Schizosaccharomyces pombe (Fission yeast)
Length = 68
Score = 71.3 bits (167), Expect = 6e-12
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = +2
Query: 47 PNVLARVVKVLGRTGSQXQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 193
P LA+V+KVLGRTGS+ TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal
protein S28; n=2; Catarrhini|Rep: PREDICTED: similar to
ribosomal protein S28 - Pan troglodytes
Length = 356
Score = 70.5 bits (165), Expect = 1e-11
Identities = 33/44 (75%), Positives = 38/44 (86%)
Frame = +2
Query: 44 KPNVLARVVKVLGRTGSQXQCTQVKVEFIGETSRQIIRNVKGPV 175
+P LARV KVLGRTGSQ QCTQV+V+F+ +TSR IIRNVKGPV
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVKFMDDTSRSIIRNVKGPV 50
>UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13;
Magnoliophyta|Rep: 40S ribosomal protein S28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 63.7 bits (148), Expect = 1e-09
Identities = 33/53 (62%), Positives = 41/53 (77%)
Frame = +2
Query: 38 MDKPNVLARVVKVLGRTGSQXQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 196
MD A VVKV+GRTGS+ Q TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Metazoa
group|Rep: Ribosomal protein S28e - Aspergillus
fumigatus (Sartorya fumigata)
Length = 56
Score = 58.0 bits (134), Expect = 6e-08
Identities = 27/43 (62%), Positives = 34/43 (79%)
Frame = +2
Query: 44 KPNVLARVVKVLGRTGSQXQCTQVKVEFIGETSRQIIRNVKGP 172
+P L +V +VLGRTGS+ TQV+VEF+ +TSR IIRNVKGP
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGP 48
>UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;
n=2; Sordariomycetes|Rep: 40S ribosomal protein S28-like
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 85
Score = 55.6 bits (128), Expect = 3e-07
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +2
Query: 44 KPNVLARVVKVLGRTGSQXQCTQVKVEFIGETSRQIIRNVKGP 172
+P L +V +VLGRTGS+ TQV+VEF+ + SR IIRNVKGP
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQSRSIIRNVKGP 48
>UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence; n=2;
Mus musculus|Rep: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 148
Score = 52.4 bits (120), Expect = 3e-06
Identities = 26/43 (60%), Positives = 29/43 (67%)
Frame = -1
Query: 186 SPSRTGPFTFLMI*RLVSPMNSTLT*VHCXCDPVRPSTFTTRA 58
SP RTGP TF M RLVS ++ST T HC C+PV PST T A
Sbjct: 84 SPFRTGPLTFQMKERLVSFIDSTPTCAHCPCEPVLPSTLVTLA 126
>UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellular
organisms|Rep: 30S ribosomal protein S28e - Methanopyrus
kandleri
Length = 74
Score = 52.4 bits (120), Expect = 3e-06
Identities = 27/47 (57%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Frame = +2
Query: 59 ARVVKVLGRTGSQXQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 193
A VV++LGRTG + TQVKV + + R I RNVKGPVR+GDIL
Sbjct: 15 AEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDIL 61
>UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n=1;
Gallus gallus|Rep: UPI0000EC9EE1 UniRef100 entry -
Gallus gallus
Length = 112
Score = 52.0 bits (119), Expect = 4e-06
Identities = 26/53 (49%), Positives = 34/53 (64%)
Frame = -3
Query: 232 SKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLXL*SGAAEH 74
++ P LRLE+G+DVS+ R LHV DD A + ELH LS L L +G A+H
Sbjct: 56 AQPPRLALRLEQGEDVSLPHRPLHVADDGAARVVHELHAHLSALPLGAGPAQH 108
>UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=1;
Trypanosoma brucei|Rep: 40S ribosomal protein S33,
putative - Trypanosoma brucei
Length = 103
Score = 51.2 bits (117), Expect = 6e-06
Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 5/49 (10%)
Frame = +2
Query: 65 VVKVLGRTGSQXQCTQVKVEFIGE-----TSRQIIRNVKGPVRDGDILT 196
++KVLGRTGS+ TQV+V + E +R I+RNVKGP ++GD+L+
Sbjct: 43 IIKVLGRTGSRGNVTQVRVRLMAEEGSPEANRTIVRNVKGPCKEGDMLS 91
>UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27;
Archaea|Rep: 30S ribosomal protein S28e - Methanococcus
jannaschii
Length = 75
Score = 49.2 bits (112), Expect = 3e-05
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Frame = +2
Query: 44 KPNVLARVVKVLGRTGSQXQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 193
K V A V++V+GRTG QV+ + +G +T R ++RNVKGPV+ GDI+
Sbjct: 8 KEAVAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDII 59
>UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila
melanogaster|Rep: IP17744p - Drosophila melanogaster
(Fruit fly)
Length = 73
Score = 48.0 bits (109), Expect = 6e-05
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +2
Query: 59 ARVVKVLGRTGSQXQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 190
ARV+K+L R G++ T+V+V+ + + Q +R VKGPVR GD+
Sbjct: 7 ARVIKILNRIGARGILTEVRVQLVDQPKMQFMRTVKGPVRLGDV 50
>UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiella
natans|Rep: Ribosomal protein S28 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 65
Score = 46.8 bits (106), Expect = 1e-04
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +2
Query: 65 VVKVLGRTGSQXQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 193
V K+L + G + Q TQV+V+ I + +IRN+KGPVR GDI+
Sbjct: 13 VTKILKKVGKRGQGTQVRVKSITNIKKTLIRNIKGPVRIGDIV 55
>UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14;
Archaea|Rep: 30S ribosomal protein S28e - Sulfolobus
solfataricus
Length = 83
Score = 44.4 bits (100), Expect = 7e-04
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +2
Query: 59 ARVVKVLGRTGSQXQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 193
A V+++L RTG + TQV+V + + R + RNVKGPVR GDIL
Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDIL 67
>UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S28
- Encephalitozoon cuniculi
Length = 65
Score = 41.5 bits (93), Expect = 0.005
Identities = 23/51 (45%), Positives = 28/51 (54%)
Frame = +2
Query: 41 DKPNVLARVVKVLGRTGSQXQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 193
++ V VLGRTG TQVK+E + R I R VKGPV GDI+
Sbjct: 3 EQQEFFGEVTHVLGRTGGSGLLTQVKMELM-HNKRTIQRAVKGPVAVGDII 52
>UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S28e -
Halobacterium salinarium (Halobacterium halobium)
Length = 74
Score = 41.5 bits (93), Expect = 0.005
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = +2
Query: 59 ARVVKVLGRTGSQXQCTQVK--VEFIGETSRQIIRNVKGPVRDGDIL 193
A V++V+G+TG + QVK ++ G R I RNV GPVR GD++
Sbjct: 13 AEVIEVVGKTGMHGEAMQVKCRIQEGGNQGRIITRNVLGPVRVGDVI 59
>UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|Rep:
OTTHUMP00000028879 - Homo sapiens (Human)
Length = 57
Score = 39.9 bits (89), Expect = 0.016
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 47 PNVLARVVKVLGRTGSQXQCTQVKVEFIGETSRQIIR 157
P L + KVLGRT SQ QCT+V VEF+ S+++ R
Sbjct: 8 PVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44
>UniRef50_Q7QNK8 Cluster: ENSANGP00000015156; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000015156 - Anopheles gambiae
str. PEST
Length = 41
Score = 34.7 bits (76), Expect = 0.59
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 85 HRITGTVYSGQSGVHRRD*PSDHQER 162
+RI GTVY G+ GV R PSDH +R
Sbjct: 16 YRIPGTVYPGKGGVPERAKPSDHPQR 41
>UniRef50_UPI00006A05C0 Cluster: Leukemia inhibitory factor receptor
precursor (LIF receptor) (LIF-R) (CD118 antigen).; n=5;
Xenopus tropicalis|Rep: Leukemia inhibitory factor
receptor precursor (LIF receptor) (LIF-R) (CD118
antigen). - Xenopus tropicalis
Length = 990
Score = 31.9 bits (69), Expect = 4.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 284 NLDSWYIMSLNLGYRTFIEVSWLHAPTREGSG 189
NLD W + + +LG RT + V W H P E +G
Sbjct: 415 NLDIWLVNARHLGGRT-VTVYWKHLPINEANG 445
>UniRef50_Q4CQB5 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 475
Score = 31.5 bits (68), Expect = 5.5
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 67 RESARPHRITGTVYSGQSGVHRRD*PSDHQEREGTCPRRRHPDP 198
RE +RP R TV++ + G+H R + + C RRRHP P
Sbjct: 261 REGSRPSR---TVHTPRDGIHARK--AHNVSSHPPCRRRRHPPP 299
>UniRef50_A7TAQ7 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 111
Score = 30.7 bits (66), Expect = 9.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 80 GRTGSQXQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 190
G G + Q QV + + GET + ++ V+G GDI
Sbjct: 63 GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI 99
>UniRef50_A7S7T2 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 238
Score = 30.7 bits (66), Expect = 9.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 65 VVKVLGRTGSQXQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 196
V+ LG T S T++ V+F+ ET RQ++ K P+ D+ T
Sbjct: 173 VIAALGNTWSHAVNTRLIVQFLDETYRQVM-IAKSPIAPFDVFT 215
>UniRef50_Q6L058 Cluster: Molybdopterin (MPT) converting factor,
subunit 2; n=2; Thermoplasmatales|Rep: Molybdopterin
(MPT) converting factor, subunit 2 - Picrophilus
torridus
Length = 137
Score = 30.7 bits (66), Expect = 9.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 91 SGAAEHFHDTSKNVRLIHXELYIELREILV 2
SG F +TS N+R ++ E YI++ E ++
Sbjct: 30 SGTVRSFDETSDNIRALYYEAYIDMAESII 59
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 336,048,406
Number of Sequences: 1657284
Number of extensions: 5807892
Number of successful extensions: 11964
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11954
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14868845845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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