Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H01
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    78   2e-15
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    27   3.4  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 40/54 (74%), Positives = 45/54 (83%), Gaps = 1/54 (1%)
 Frame = +2

Query: 38  MDKPNVLARVVKVLGRTGSQXQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 196
           MDK   LARV KV+GRTGSQ QCTQV+VEFI  + +R IIRNVKGPVR+GDILT
Sbjct: 1   MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
            protein Y81G3A.3 protein.
          Length = 1696

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 217  FTLRLEKGQDVSVADRSLHVPDDLTASLSDELH 119
            FTL++   Q +    R L + DD+ A L D LH
Sbjct: 1195 FTLKIGHAQLIEAQIRHLKLSDDVRAELLDALH 1227


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 110 QVKVEFIGETSRQIIRNVKGP-VRD 181
           Q+ +E++G    Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 148 DHQEREGTCP--RRRHPDPSRVGA*SQETSIKVLYPRLRLIMYQLSK 282
           D++ +   CP    R+P P+   A +++     LYP+   I Y L K
Sbjct: 81  DYRAKIWMCPFCNNRNPFPAHYAAIAEDNRPPELYPQFTTIEYTLRK 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,647,240
Number of Sequences: 27780
Number of extensions: 133075
Number of successful extensions: 286
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)