Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H01
(381 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B) ribo... 64 4e-11
At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) simi... 64 4e-11
At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C) 62 9e-11
At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein / antiterm... 29 1.4
At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in... 27 4.2
At5g16030.1 68418.m01874 expressed protein 26 7.4
At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containi... 26 9.7
At3g25910.1 68416.m03230 expressed protein 26 9.7
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi... 26 9.7
>At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B)
ribosomal protein S28, Arabidopsis thaliana,
EMBL:ATRP28A
Length = 64
Score = 63.7 bits (148), Expect = 4e-11
Identities = 33/53 (62%), Positives = 41/53 (77%)
Frame = +2
Query: 38 MDKPNVLARVVKVLGRTGSQXQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 196
MD A VVKV+GRTGS+ Q TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) similar
to ribosomal protein S28 GB:P34789 [Arabidopsis
thaliana]
Length = 64
Score = 63.7 bits (148), Expect = 4e-11
Identities = 33/53 (62%), Positives = 41/53 (77%)
Frame = +2
Query: 38 MDKPNVLARVVKVLGRTGSQXQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 196
MD A VVKV+GRTGS+ Q TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C)
Length = 64
Score = 62.5 bits (145), Expect = 9e-11
Identities = 32/53 (60%), Positives = 41/53 (77%)
Frame = +2
Query: 38 MDKPNVLARVVKVLGRTGSQXQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 196
MD A VVKV+GRTGS+ Q TQV+V+F ++ R I+RNVKGPVR+GD+LT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRFIMRNVKGPVREGDVLT 52
>At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein /
antitermination NusB domain-containing protein low
similarity to SP|P36929 SUN protein (FMU protein)
{Escherichia coli}; contains Pfam profiles PF01189:
NOL1/NOP2/sun family, PF01029: NusB family
Length = 523
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -3
Query: 232 SKSPGFTLRLEKGQDVSVAD-----RSLHVPDDLTASLSD 128
+ PGF+LR G+D++ AD SL VP +L+ L +
Sbjct: 251 NNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEE 290
>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF00646: F-box domain
Length = 373
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 241 GPLSKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLST 104
GP+ P F LR+ V V D +HV DL ++E +DL T
Sbjct: 142 GPIK--PEF-LRIASSSAVGVFDGKIHVIQDLKQDETEEQVYDLET 184
>At5g16030.1 68418.m01874 expressed protein
Length = 339
Score = 26.2 bits (55), Expect = 7.4
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 142 ASLSDELHFDLSTLXL*SGAAEHFHDTSKNVRLIHXELYIELREIL 5
+++S LHF S L + A++ + + NVR+IH +LY E+L
Sbjct: 143 STMSAPLHFP-SPNPLMNNIAQNKPNNNPNVRVIHEDLYAPDPELL 187
>At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 889
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 142 PSDHQEREGTCPRRRHPDPSRVGA*SQETSIKVLYPRLR 258
PS ++ R+G R P P R +ET V PR+R
Sbjct: 52 PSLNRHRDGQSNHLRRPSPMRGLPMEEETKPIVYLPRIR 90
>At3g25910.1 68416.m03230 expressed protein
Length = 372
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 67 RESARPHRITGTVYSGQSGVHRRD*PSDHQEREGTCPRRR 186
R S+RP + G Y G +G RD ++ E RR
Sbjct: 315 RRSSRPASLWGESYEGNTGTSPRDEENNQSSDEQVSGTRR 354
>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 867
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 229 KSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTL 101
+ P F R + +S R LH PD+ + +SD +STL
Sbjct: 11 RPPIFLHRFINPKPISSQTRFLHPPDNQSRDISDSTTETISTL 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,218,881
Number of Sequences: 28952
Number of extensions: 125975
Number of successful extensions: 301
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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