Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G24
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    41   1e-04
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   1.7  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.0  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   6.8  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   6.8  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    25   9.0  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.0  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   9.0  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +1

Query: 268 AEFIGNVLLNLFGCGACINITQGSNAAPDIXXXXXXXXXXXXXXXXXIGHISGGHINPAV 447
           AEF+G ++L +FG G+ +  T  + A                      G ISGGH+NPAV
Sbjct: 315 AEFLGTLVLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLGVYIAGGISGGHVNPAV 374

Query: 448 TAGM 459
           T  +
Sbjct: 375 TISL 378


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 187 VIMGELGTKLGLDELAGGAASISRALLAEFIGNVLLNLFGCG 312
           V+M  LG K G  EL  G  +++RA  A    N+L +    G
Sbjct: 39  VVMAGLGLKTGYQELYSGVENLTRADQASRCFNILQHHMSSG 80


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 461  SMPAVTAGFICPPDICPIAETAANTARPKAKAMR--TISGAALDP*VIFMQAPQPNRFSR 288
            ++PAV+A    PP + P  +    T +    A++  + +  + +   I  QAP  N+FS+
Sbjct: 1291 NVPAVSASISTPPAVVPTVQHPQPTKQIPTAAVKDPSTTSTSFNTAPIPQQAPLENQFSK 1350


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -3

Query: 521 PAHCAIT--YQIARASFTRPVESMPAVTAGFICPPDIC 414
           P  CA++  Y + R    RP  S   VTA  + P  IC
Sbjct: 477 PNLCAVSLYYHLIRICLNRPFLSRKEVTANDLTPKTIC 514


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 494 IARASFTRPVESMPAVTAGFICP 426
           +AR S +R      AV+ GF+CP
Sbjct: 286 VARGSPSREASLAQAVSEGFVCP 308


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 503 TYQIARASFTRPVESMPAVTA--GFICPPDICPIAETAANTARPKAKAMRTIS 351
           TYQ A  + T PV S P++ +    + P D+  I +   N  + +A     I+
Sbjct: 651 TYQSASGTPTNPVHSYPSLESIINALTPSDMLLIKDVVENNPQIRANPSLAIN 703


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 274 FIGNVLLNLFGCG 312
           F+GN++LNL+ CG
Sbjct: 47  FLGNLVLNLWDCG 59


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +3

Query: 393 RSCFSDRTYIRRAYKSSSDGW---HALNW 470
           R+ + +   IRR Y S S+GW   H  NW
Sbjct: 567 RNVYRNIHSIRRHYLSLSEGWRFDHIANW 595


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = -2

Query: 381 TKSEGDEDDIRCSVGSLSDIYAGATTEQVQ*DIPYKFSKKSSADTRCTSSQFVQSELSSE 202
           T +  DE+     +  LSD++   +    +   PY+ ++   AD + T+  FV   L  E
Sbjct: 197 TLTYDDEEKKTIKILQLSDLHYSNSDRPCRDPYPYETAEDCMADAKTTA--FVNELLQLE 254

Query: 201 LAHDYVLL 178
              D+VLL
Sbjct: 255 -EPDFVLL 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,321
Number of Sequences: 5004
Number of extensions: 31920
Number of successful extensions: 82
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)