Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G24
(523 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22077| Best HMM Match : MIP (HMM E-Value=0) 58 4e-09
SB_22128| Best HMM Match : MIP (HMM E-Value=9.1e-08) 46 2e-05
SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42) 44 1e-04
SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_33719| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_20374| Best HMM Match : zf-U1 (HMM E-Value=1.7) 31 0.58
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 29 3.1
SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5) 28 5.4
SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
>SB_22077| Best HMM Match : MIP (HMM E-Value=0)
Length = 374
Score = 58.0 bits (134), Expect = 4e-09
Identities = 27/88 (30%), Positives = 42/88 (47%)
Frame = +1
Query: 259 ALLAEFIGNVLLNLFGCGACINITQGSNAAPDIXXXXXXXXXXXXXXXXXIGHISGGHIN 438
++ AEF+ CG+C+ N P + +GH SGGHIN
Sbjct: 49 SVFAEFLATFFFVFMVCGSCL--LWDKNDPPAVQHIALCAGLGIATWAMAVGHWSGGHIN 106
Query: 439 PAVTAGMLSTGRVKLARAIWYVIAQCAG 522
PAVT G LS+ ++ + + + Y++AQ G
Sbjct: 107 PAVTVGFLSSNKIAILQGVCYIVAQFFG 134
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 415 HISGGHINPAVTAGMLSTGRVKLARAIWYVIAQCAG 522
HISGGHINPAVT + +V R +YVI Q G
Sbjct: 192 HISGGHINPAVTISFMIVRKVSFLRGAFYVIGQVGG 227
>SB_22128| Best HMM Match : MIP (HMM E-Value=9.1e-08)
Length = 235
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +1
Query: 250 ISRALLAEFIGNVLLNLFGCGACINITQGSNAAPDIXXXXXXXXXXXXXXXXXIGHISGG 429
I A L E G++L GC + ++ ++ I + SGG
Sbjct: 23 IISASLVEIFGSLLYGFLGCASTVSF----DSPRSIESIALSYGILYAVLVYILAPFSGG 78
Query: 430 HINPAVTAGMLSTGRVKLARAIWYVIAQCAG 522
++NP VT +L T +V + +A++Y+I+Q G
Sbjct: 79 YVNPIVTIALLLTRKVSVLKAVFYIISQITG 109
>SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42)
Length = 365
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/87 (29%), Positives = 38/87 (43%)
Frame = +1
Query: 262 LLAEFIGNVLLNLFGCGACINITQGSNAAPDIXXXXXXXXXXXXXXXXXIGHISGGHINP 441
+LAEFI L CG + Q + P + + +S G NP
Sbjct: 20 ILAEFIITSLFVSIVCGTAL---QNWSTPPTLTHMALNSGLAAGTFAMCMWDVSSGLFNP 76
Query: 442 AVTAGMLSTGRVKLARAIWYVIAQCAG 522
A+T G L TG+ L + I+Y++AQ G
Sbjct: 77 ALTIGFLITGKKTLLQTIFYIMAQLTG 103
>SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/86 (26%), Positives = 35/86 (40%)
Frame = +1
Query: 265 LAEFIGNVLLNLFGCGACINITQGSNAAPDIXXXXXXXXXXXXXXXXXIGHISGGHINPA 444
LAE + + + C +C++ AP + + H++GG INPA
Sbjct: 70 LAELLASHVFVFLVCASCVSWPHFQ--APSVQHIALTAGLTTSTLVMVMSHVTGGQINPA 127
Query: 445 VTAGMLSTGRVKLARAIWYVIAQCAG 522
V M+ T RVK +V Q G
Sbjct: 128 VAVAMVVTRRVKPVHGFGFVFRQGLG 153
>SB_33719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 37.9 bits (84), Expect = 0.005
Identities = 28/104 (26%), Positives = 43/104 (41%)
Frame = +1
Query: 211 KLGLDELAGGAASISRALLAEFIGNVLLNLFGCGACINITQGSNAAPDIXXXXXXXXXXX 390
K+G+DE+ G+ I + AE++G +L +F A +G+ + +I
Sbjct: 4 KVGVDEVFTGSLWI--CVFAEYLGTLLF-MFSVSAASLRWEGTPSTLEIALAAGFSMATV 60
Query: 391 XXXXXXIGHISGGHINPAVTAGMLSTGRVKLARAIWYVIAQCAG 522
+ H NPAVT G L + YVI QC G
Sbjct: 61 TQVFRWVSRPLV-HANPAVTVASFLAGDTSLVASFLYVIVQCFG 103
>SB_20374| Best HMM Match : zf-U1 (HMM E-Value=1.7)
Length = 783
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 396 SCFSDRTYIRRAYKSSSDGWHALNWPCEACTCD-LVCNRAV 515
+C++D+ + + WH L PCE C D +C R V
Sbjct: 270 ACYNDKDVCDQCSEKGYTDWHPLLCPCEVCIADNSLCIRLV 310
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = -3
Query: 479 FTRPVESMPAVTAGFICPPDICPIAET------AANTARPKAKAMRTISGAALDP*VIFM 318
F RPV SM A PPD+ ++ + A++ P+A+ + A++P
Sbjct: 1205 FARPVTSMQMGMATQR-PPDMSGVSSSQRNDPLASHHVNPEARPVSQTKKMAVEPAATKA 1263
Query: 317 QAPQPNRFSRTF 282
PQPNR S F
Sbjct: 1264 PTPQPNRASPFF 1275
>SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)
Length = 696
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 321 KYHSRIQRCT*YRPHRLRFWSRRIR---SCFSDRTYIRRAYKSSSD 449
+Y R R + PHR R W+ R R + +DR R AYK +D
Sbjct: 569 RYTHRRHRHRHHHPHRHRGWAERDRYREAYVTDRVPHRPAYKEPAD 614
>SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 653
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 223 DELAGGAASISRALLAEFIGNVLLNLFG 306
D LAG S LLAE I +L N+FG
Sbjct: 196 DILAGTTIRTSAVLLAEGISGILTNIFG 223
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,531
Number of Sequences: 59808
Number of extensions: 251715
Number of successful extensions: 546
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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