Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G23
(410 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 187 5e-49
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 187 5e-49
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 36 0.002
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 0.86
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 4.6
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.1
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 6.1
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 25 6.1
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 24 8.0
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 24 8.0
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 187 bits (456), Expect = 5e-49
Identities = 92/112 (82%), Positives = 102/112 (91%)
Frame = -1
Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
VKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+
Sbjct: 92 VKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALA 151
Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
L+ GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 152 LITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 187 bits (456), Expect = 5e-49
Identities = 92/112 (82%), Positives = 102/112 (91%)
Frame = -1
Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
VKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+
Sbjct: 92 VKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALA 151
Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
L+ GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 152 LITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 35.9 bits (79), Expect = 0.002
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Frame = -1
Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI- 234
V A II TGENP+ VL AI P R + + +R A+
Sbjct: 146 VATALSIIQKETGENPIDVLKQAIAEISPLMKLVSAKRFNKSVEFPMPLKERQRRRIALQ 205
Query: 233 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
W+L E + K +++ + E+I +SN + KKKD L R+ NR
Sbjct: 206 WIL----GECKSSSPKRLSDRIVKEIIAIRSKTSNCF--KKKDHLHRMCLVNR 252
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 0.86
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 401 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 249
+ +I HL+TG N + T ++N R D R+ R+ + Q+ D SP +R
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 4.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 161 ELINAAKGSSNSYAIKKKDELER 93
E +N+ + NS ++KKDELE+
Sbjct: 133 EKLNSEISNQNSLILQKKDELEK 155
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 262 PHYVVLTRLSGYCAQEH 212
PH+ V+TR+ YC H
Sbjct: 1435 PHWQVITRIPQYCHDTH 1451
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 6.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 395 EIIHLLTGENPLQVLVTAIINSGPREDSTR 306
EI +LTGENP ++ AI+ R + R
Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = +1
Query: 178 AIVLMFLNAASRAPVHNNQIAWLTRRNGDTSTA*RRTVPARPILVESSLGPELIIAVTRT 357
A +L + ++ R+ H ++ L N T++ +R +PA + S+ +L +
Sbjct: 391 AKLLDLVKSSYRSSFHTKKMTSLFTHNNHTTSNIQREIPASDSIAWHSISKKLGTKSPES 450
Query: 358 CR 363
CR
Sbjct: 451 CR 452
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 24.2 bits (50), Expect = 8.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 212 REAAFRNIKTIAECVADELINAAKGSSNS 126
R+ A+RN KT+A+ A +N + N+
Sbjct: 261 RDVAYRNAKTVAKWQAYGFMNGVLNTDNT 289
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 24.2 bits (50), Expect = 8.0
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +1
Query: 136 EPLAALISSSATHSAIVLMFLNAASRAPVHNNQIAWLTRRNGD 264
+PL AL SSS S + L AA N WL + D
Sbjct: 371 QPLDALKSSSTQTSIPKIQKLKAAKLPSEEENTTKWLNKAIND 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,566,712
Number of Sequences: 5004
Number of extensions: 29862
Number of successful extensions: 78
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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