Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G23
(410 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 198 1e-51
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 198 1e-51
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817... 31 0.27
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913... 29 1.4
01_06_1495 + 37769982-37771496 29 1.4
07_01_0705 - 5313315-5315219,5315858-5315860 27 5.8
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672... 27 5.8
05_03_0492 - 14688449-14689445,14689910-14690070,14690690-14691022 27 7.7
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 198 bits (484), Expect = 1e-51
Identities = 96/112 (85%), Positives = 105/112 (93%)
Frame = -1
Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
VKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+
Sbjct: 88 VKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPLRRVNQAIY 147
Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 148 LLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 199
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 198 bits (484), Expect = 1e-51
Identities = 96/112 (85%), Positives = 105/112 (93%)
Frame = -1
Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
VKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+
Sbjct: 89 VKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPLRRVNQAIY 148
Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 149 LLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 200
>01_07_0219 +
42079095-42079399,42079584-42079728,42081695-42081739,
42082150-42082265,42082913-42083012,42083103-42083138,
42083301-42083351,42083431-42083565
Length = 310
Score = 31.5 bits (68), Expect = 0.27
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -1
Query: 284 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 126
RR+AV + +RR+ A WL GAR A R A E++ +A G S
Sbjct: 9 RREAVRAAHVRRIEAAAWL---GARRATRREDAAARCAAAGEVVGSAAGVGRS 58
>07_03_0100 +
13389899-13390219,13390723-13390841,13391220-13391315,
13391481-13391553,13392055-13392123
Length = 225
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 196 LNAASRAPVHNNQIAWLTRRNGDTSTA*RRTVPARPILVESSLGPE 333
L+A+SR P ++I RR G + + RR+ P +P + PE
Sbjct: 49 LHASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94
>01_06_1495 + 37769982-37771496
Length = 504
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 325 QEKTPPGSVVLVQFDVKPSMCPH-YVVLTRLSGYCAQEHVRLHL 197
+E PPGS V++Q + + + PH + L G+ ++R+H+
Sbjct: 240 RENLPPGSYVVLQLEKEEILAPHTHFCLICGKGFKRDANLRMHM 283
>07_01_0705 - 5313315-5315219,5315858-5315860
Length = 635
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 294 STTDPGGVFSWTRINNSS 347
S T PGGV WTR+ NS+
Sbjct: 96 SYTSPGGVEVWTRVCNST 113
>02_05_0969 +
33165396-33165935,33166352-33166883,33166988-33167242,
33167515-33167606,33167745-33167942,33168049-33168240,
33168341-33168562,33168858-33169024,33169117-33169210,
33169308-33169364,33169459-33169587,33169681-33169752,
33170180-33170293,33170419-33170580,33170666-33170794,
33171057-33171158,33171266-33171342,33171470-33171592,
33171666-33172227
Length = 1272
Score = 27.1 bits (57), Expect = 5.8
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = -1
Query: 389 IHLLTGENPLQVLVTAIINSGPRED-----STRIGRAGTVRRQAVDVSPLRRVNQAIWLL 225
+ L+ GE L V A + PRED +T A VR Q V +P+ A L
Sbjct: 22 LSLMDGEPDLAAAVLARLGGSPREDDQHLCATAAAMAQAVRDQGVAATPVAYFAAAAAAL 81
Query: 224 CTGAREAA 201
AR A
Sbjct: 82 APLARAGA 89
>05_03_0492 - 14688449-14689445,14689910-14690070,14690690-14691022
Length = 496
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 88 ATRSSSSFFLMAYELDEPLAALISSSATHSAIVLMFLNAASRAPVHNNQIAWLTR 252
A R SSF L++ + LAA++S A A V N A H++ +A L R
Sbjct: 322 AARRMSSFTLVSSQTQRTLAAVLSDEAFVDAYVA--ANRARLRERHDHVVAGLAR 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,317,840
Number of Sequences: 37544
Number of extensions: 203213
Number of successful extensions: 532
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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