Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G23
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               221   2e-58
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               31   0.37 
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                30   0.65 
SB_29641| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_8071| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)              27   6.0  
SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12)                  27   7.9  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  221 bits (539), Expect = 2e-58
 Identities = 106/112 (94%), Positives = 111/112 (99%)
 Frame = -1

Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
           +KH+FEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW
Sbjct: 161 IKHSFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 220

Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
           LLCTGARE+AFRNIK+IAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 221 LLCTGARESAFRNIKSIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 272


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -1

Query: 185 TIAECVADELINAAKGSSNSY--AIKKKDELERVAK 84
           T  +C+ DEL +  +G  NSY   +K+K+ELER  K
Sbjct: 422 TEVQCLRDELKDNEQGMDNSYQAILKEKEELERSHK 457


>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 277 KPSMCPHYVVLTRLSGYCAQEHVRLHLETSKQ*PNVSLMN-LSMLPRAHLTHT 122
           +PS+ P      RLS Y        H  T+KQ P+V+L    S LP  +  HT
Sbjct: 136 RPSVTPQQPYSVRLSRYKNHTAPFRHARTTKQRPSVTLQQPYSALPSRYNNHT 188


>SB_29641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 239 PG*HDVMGTHRRLDVELYQHDRSWWSLL 322
           P   DV   HRR+D+ L  HD+ +  +L
Sbjct: 187 PEERDVRRLHRRIDIRLIPHDQYYCGIL 214


>SB_8071| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)
          Length = 478

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/45 (20%), Positives = 26/45 (57%)
 Frame = +1

Query: 79  LDLATRSSSSFFLMAYELDEPLAALISSSATHSAIVLMFLNAASR 213
           L +  R  ++ F++ YE+DE + ++++   +   ++L++  A  +
Sbjct: 35  LGVNQRKDNNHFVLTYEVDEVMTSMVTLQISADDVILIYNRAEGK 79


>SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12)
          Length = 849

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -1

Query: 227 LCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAK 84
           LC+   E    N  +  EC   E+   A  +SN + +   D + + AK
Sbjct: 639 LCSTLTEHRSYNPSSSVECFEGEVSRTASSNSNEHCVVDPDIVSKAAK 686


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,948,504
Number of Sequences: 59808
Number of extensions: 242230
Number of successful extensions: 632
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)