Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G23
         (410 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14970-1|AAA85658.1|  204|Homo sapiens ribosomal protein S5 prot...   225   4e-59
BC018151-1|AAH18151.1|  204|Homo sapiens ribosomal protein S5 pr...   225   4e-59
BC015405-1|AAH15405.1|  204|Homo sapiens ribosomal protein S5 pr...   225   4e-59
AB061853-1|BAB79493.1|  204|Homo sapiens ribosomal protein S5 pr...   225   4e-59
AK223106-1|BAD96826.1|  204|Homo sapiens ribosomal protein S5 va...   221   5e-58
AB007149-1|BAA25815.1|   55|Homo sapiens ribosomal protein S5 pr...   113   2e-25
AB209803-1|BAD93040.1|  107|Homo sapiens ribosomal protein S5 va...    35   0.12 

>U14970-1|AAA85658.1|  204|Homo sapiens ribosomal protein S5
           protein.
          Length = 204

 Score =  225 bits (550), Expect = 4e-59
 Identities = 110/112 (98%), Positives = 111/112 (99%)
 Frame = -1

Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
           VKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW
Sbjct: 93  VKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 152

Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
           LLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 153 LLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204


>BC018151-1|AAH18151.1|  204|Homo sapiens ribosomal protein S5
           protein.
          Length = 204

 Score =  225 bits (550), Expect = 4e-59
 Identities = 110/112 (98%), Positives = 111/112 (99%)
 Frame = -1

Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
           VKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW
Sbjct: 93  VKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 152

Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
           LLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 153 LLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204


>BC015405-1|AAH15405.1|  204|Homo sapiens ribosomal protein S5
           protein.
          Length = 204

 Score =  225 bits (550), Expect = 4e-59
 Identities = 110/112 (98%), Positives = 111/112 (99%)
 Frame = -1

Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
           VKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW
Sbjct: 93  VKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 152

Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
           LLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 153 LLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204


>AB061853-1|BAB79493.1|  204|Homo sapiens ribosomal protein S5
           protein.
          Length = 204

 Score =  225 bits (550), Expect = 4e-59
 Identities = 110/112 (98%), Positives = 111/112 (99%)
 Frame = -1

Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
           VKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW
Sbjct: 93  VKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 152

Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
           LLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 153 LLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204


>AK223106-1|BAD96826.1|  204|Homo sapiens ribosomal protein S5
           variant protein.
          Length = 204

 Score =  221 bits (541), Expect = 5e-58
 Identities = 108/112 (96%), Positives = 110/112 (98%)
 Frame = -1

Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
           VKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW
Sbjct: 93  VKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 152

Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
           LLCTGAREAAFRNIKTIAEC+ADELINAAKGSSN YAIKK+DELERVAKSNR
Sbjct: 153 LLCTGAREAAFRNIKTIAECLADELINAAKGSSNFYAIKKRDELERVAKSNR 204


>AB007149-1|BAA25815.1|   55|Homo sapiens ribosomal protein S5
           protein.
          Length = 55

 Score =  113 bits (272), Expect = 2e-25
 Identities = 54/55 (98%), Positives = 55/55 (100%)
 Frame = -1

Query: 239 AIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
           AIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 1   AIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 55


>AB209803-1|BAD93040.1|  107|Homo sapiens ribosomal protein S5
           variant protein.
          Length = 107

 Score = 34.7 bits (76), Expect = 0.12
 Identities = 18/23 (78%), Positives = 18/23 (78%)
 Frame = -1

Query: 410 VKHAFEIIHLLTGENPLQVLVTA 342
           VKHAFEIIHLLTGE  L  LV A
Sbjct: 30  VKHAFEIIHLLTGEVGLCGLVRA 52


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,350,825
Number of Sequences: 237096
Number of extensions: 1130366
Number of successful extensions: 2027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2027
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)