Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G23
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   219   5e-58
Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  219 bits (536), Expect = 5e-58
 Identities = 105/112 (93%), Positives = 111/112 (99%)
 Frame = -1

Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
           VKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGRAGTVRRQAVDV+PLRRVNQAIW
Sbjct: 99  VKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIW 158

Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
           LLCTGAREAAFRN+KTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 159 LLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210


>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -1

Query: 254 RRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
           +RV   +    T    A  RN   + E  A+E I A +   N +A+K +   +  A SNR
Sbjct: 474 QRVQDTVQKARTAVGYAGTRNRSPLREADAEE-IAATEALKNRFAVKSRGTAKAKANSNR 532


>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 244 TRLSGYCAQEHVRLHLETSKQ*PNVSLMNLSMLPRAHLTHTPSRKRMSWS 95
           +R SG   ++ +   L+     P V L   S LPR   T+TPS    SW+
Sbjct: 588 SRDSGLQCEDWIDGRLDGGPPGP-VPLSGTSTLPRGSNTNTPSSANASWT 636


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,689,755
Number of Sequences: 27780
Number of extensions: 173054
Number of successful extensions: 478
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)