Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G23
(410 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi... 196 5e-51
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 195 8e-51
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 195 8e-51
At4g39450.1 68417.m05582 expressed protein 29 1.6
At1g59590.1 68414.m06702 expressed protein 28 2.8
At2g33320.1 68415.m04084 C2 domain-containing protein low simila... 27 3.7
At4g09760.3 68417.m01604 choline kinase, putative similar to GmC... 26 8.6
At4g09760.2 68417.m01603 choline kinase, putative similar to GmC... 26 8.6
At4g09760.1 68417.m01602 choline kinase, putative similar to GmC... 26 8.6
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta... 26 8.6
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta... 26 8.6
>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
to GP:3043428
Length = 207
Score = 196 bits (478), Expect = 5e-51
Identities = 94/112 (83%), Positives = 105/112 (93%)
Frame = -1
Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
VKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+
Sbjct: 96 VKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIF 155
Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
LL TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 156 LLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 195 bits (476), Expect = 8e-51
Identities = 93/112 (83%), Positives = 105/112 (93%)
Frame = -1
Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
VKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+
Sbjct: 96 VKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIF 155
Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 156 LITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 195 bits (476), Expect = 8e-51
Identities = 93/112 (83%), Positives = 105/112 (93%)
Frame = -1
Query: 410 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 231
VKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+
Sbjct: 96 VKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIF 155
Query: 230 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 75
L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 156 LITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
>At4g39450.1 68417.m05582 expressed protein
Length = 1553
Score = 28.7 bits (61), Expect = 1.6
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = -1
Query: 269 DVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 126
DVSPL + IWL T ARE + + I +A E I AA S+NS
Sbjct: 411 DVSPLSCLT--IWLEITAARETSSIKVNDITTKIA-ENIGAAVVSTNS 455
>At1g59590.1 68414.m06702 expressed protein
Length = 211
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 143 KGSSNSYAIKKKDELERVAKSNR 75
+GSS SYA+KKKD +++ NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196
>At2g33320.1 68415.m04084 C2 domain-containing protein low
similarity to splicing coactivator subunit SRm300 [Homo
sapiens] GI:6649242; contains Pfam profile PF00168: C2
domain
Length = 602
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 199 NAASRAPVHNNQIAWLTRRNGDTSTA*RRTVPARPILVESSLGP 330
N P+ +N A + T R + RP+L ES LGP
Sbjct: 410 NIVGSTPIRSNYKATPMKSPMQFGTPMRSNLAGRPVLTESELGP 453
>At4g09760.3 68417.m01604 choline kinase, putative similar to GmCK2p
choline kinase gi|1438881|gb|AAC49375
Length = 255
Score = 26.2 bits (55), Expect = 8.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 250 VLTRLSGYCAQE--HVRLHLETSKQ*PNVSLMNLSMLPRAHLTHTPSRKRM 104
+L R +G +E H R T + PN+S + S L R H H P + M
Sbjct: 102 LLGRFAGGRVEEFIHARTLSATDLRDPNISALVASKLRRFHSIHIPGDRIM 152
>At4g09760.2 68417.m01603 choline kinase, putative similar to GmCK2p
choline kinase gi|1438881|gb|AAC49375
Length = 346
Score = 26.2 bits (55), Expect = 8.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 250 VLTRLSGYCAQE--HVRLHLETSKQ*PNVSLMNLSMLPRAHLTHTPSRKRM 104
+L R +G +E H R T + PN+S + S L R H H P + M
Sbjct: 102 LLGRFAGGRVEEFIHARTLSATDLRDPNISALVASKLRRFHSIHIPGDRIM 152
>At4g09760.1 68417.m01602 choline kinase, putative similar to GmCK2p
choline kinase gi|1438881|gb|AAC49375
Length = 346
Score = 26.2 bits (55), Expect = 8.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 250 VLTRLSGYCAQE--HVRLHLETSKQ*PNVSLMNLSMLPRAHLTHTPSRKRM 104
+L R +G +E H R T + PN+S + S L R H H P + M
Sbjct: 102 LLGRFAGGRVEEFIHARTLSATDLRDPNISALVASKLRRFHSIHIPGDRIM 152
>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 706
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 270 DGLTSNCTSTTDPGGVFSWTRINNSSHQNLQRV 368
DG C+ + PGG+ +I+ S+H + +V
Sbjct: 323 DGSNGTCSKKSTPGGLIYPNQISMSAHASANKV 355
>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 706
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 270 DGLTSNCTSTTDPGGVFSWTRINNSSHQNLQRV 368
DG C+ + PGG+ +I+ S+H + +V
Sbjct: 323 DGSNGTCSKKSTPGGLIYPNQISMSAHASANKV 355
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,252,770
Number of Sequences: 28952
Number of extensions: 160531
Number of successful extensions: 435
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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