Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G22
(563 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 159 4e-38
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 82 8e-15
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 76 7e-13
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 75 9e-13
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 75 1e-12
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 75 2e-12
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 72 1e-11
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 68 1e-10
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 67 2e-10
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 66 7e-10
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 64 2e-09
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 62 9e-09
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 5e-08
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 60 5e-08
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 59 6e-08
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 58 1e-07
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 58 1e-07
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 58 2e-07
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 56 8e-07
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 53 5e-06
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 52 7e-06
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 52 7e-06
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 52 9e-06
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 50 3e-05
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 49 9e-05
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 48 1e-04
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 48 1e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 47 3e-04
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 47 3e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 5e-04
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 45 0.001
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 45 0.001
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 44 0.002
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 43 0.004
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 43 0.006
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 42 0.008
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.013
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 41 0.023
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 41 0.023
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 40 0.030
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 40 0.040
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 40 0.040
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.040
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.040
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 40 0.040
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 40 0.053
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 39 0.093
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.093
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 38 0.12
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.16
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.16
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.21
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 37 0.28
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 0.28
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 37 0.28
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 37 0.37
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 36 0.49
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.49
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.49
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 36 0.49
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 0.49
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.49
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 36 0.65
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 36 0.65
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 36 0.86
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.86
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.86
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.5
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 1.5
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 35 1.5
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 35 1.5
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 34 2.0
UniRef50_Q6MYA2 Cluster: Zinc finger protein, putative; n=2; Asp... 34 2.0
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 34 2.0
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 34 2.0
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 2.6
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 33 3.5
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 33 3.5
UniRef50_Q8IQ18 Cluster: CG33196-PB; n=10; Endopterygota|Rep: CG... 33 4.6
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 4.6
UniRef50_UPI0000E4A709 Cluster: PREDICTED: similar to EGF-like p... 32 8.1
UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2; ... 32 8.1
UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1; Met... 32 8.1
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 159 bits (386), Expect = 4e-38
Identities = 75/86 (87%), Positives = 80/86 (93%)
Frame = +2
Query: 305 ENR*NWDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 484
E + DY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQVVNIPSFI
Sbjct: 89 EGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFI 148
Query: 485 VRLDSGKHIDFSLKSPFGGGRPGRVK 562
VRLDS KHIDFSL+SP+GGGRPGRVK
Sbjct: 149 VRLDSQKHIDFSLRSPYGGGRPGRVK 174
Score = 133 bits (321), Expect = 3e-30
Identities = 61/69 (88%), Positives = 67/69 (97%)
Frame = +3
Query: 60 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 239
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 240 PKRLFEGNA 266
P+RLFEGNA
Sbjct: 68 PRRLFEGNA 76
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 82.2 bits (194), Expect = 8e-15
Identities = 39/70 (55%), Positives = 54/70 (77%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
++VL LK E+ LERRLQT V++ G AKSIHHAR+LIR + I+V KQVV++PSF+VR++S
Sbjct: 94 EFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESE 153
Query: 503 KHIDFSLKSP 532
I + +P
Sbjct: 154 PLIQLADNTP 163
Score = 78.2 bits (184), Expect = 1e-13
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +3
Query: 66 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 245
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 246 RLFEGNA 266
RL EG A
Sbjct: 69 RLLEGAA 75
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 75.8 bits (178), Expect = 7e-13
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +3
Query: 54 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 227
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLAL 61
Score = 56.8 bits (131), Expect = 3e-07
Identities = 30/71 (42%), Positives = 42/71 (59%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
D VL LK+ LERRLQT V++ GLA+S AR L+ HI + + V +P ++V
Sbjct: 95 DNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEE 154
Query: 503 KHIDFSLKSPF 535
I ++ KSPF
Sbjct: 155 TTISYAGKSPF 165
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 75.4 bits (177), Expect = 9e-13
Identities = 42/79 (53%), Positives = 51/79 (64%)
Frame = +2
Query: 326 YVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 505
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR+ KQVV+I F V LDS K
Sbjct: 102 WAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSRK 160
Query: 506 HIDFSLKSPFGGGRPGRVK 562
H DF GGG PG VK
Sbjct: 161 HTDFFRHCLNGGGYPGSVK 179
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/35 (68%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Frame = +3
Query: 162 EVWRVKYTLARIRKAARE-LLTLEEKDPKRLFEGN 263
EVWRVK+TL +IRKA E LL L EKDP+ LFE N
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDN 75
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 74.9 bits (176), Expect = 1e-12
Identities = 36/70 (51%), Positives = 50/70 (71%)
Frame = +2
Query: 329 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 508
VL L I +LERRLQ +VF AGLAKS+HHAR+LI R I ++ Q+V++P F+VR D
Sbjct: 101 VLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPL 160
Query: 509 IDFSLKSPFG 538
I+++ S +G
Sbjct: 161 IEYNPYSRYG 170
Score = 56.0 bits (129), Expect = 6e-07
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +3
Query: 66 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 224
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT 59
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 74.5 bits (175), Expect = 2e-12
Identities = 37/68 (54%), Positives = 48/68 (70%)
Frame = +3
Query: 63 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 242
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 243 KRLFEGNA 266
+R+FEG A
Sbjct: 59 RRIFEGEA 66
Score = 58.8 bits (136), Expect = 8e-08
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 445
DYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 85 DYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 71.7 bits (168), Expect = 1e-11
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +3
Query: 54 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 230
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQ 62
Score = 55.2 bits (127), Expect = 1e-06
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
D VL LK+E L+RRLQTQV++ G A+S AR I HI + + V IP + V
Sbjct: 95 DDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQ 154
Query: 503 KHIDFSLKSP 532
+ I ++ SP
Sbjct: 155 EEISYAGSSP 164
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 68.1 bits (159), Expect = 1e-10
Identities = 33/67 (49%), Positives = 46/67 (68%)
Frame = +2
Query: 329 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 508
++ + + L RRLQT V + L+K+IH ARILI +HI+V+ Q+VN PSF+VR D+
Sbjct: 98 IIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDNEIF 157
Query: 509 IDFSLKS 529
I FSL S
Sbjct: 158 ISFSLNS 164
Score = 60.5 bits (140), Expect = 3e-08
Identities = 24/58 (41%), Positives = 42/58 (72%)
Frame = +3
Query: 63 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEK 236
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAK 67
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 67.3 bits (157), Expect = 2e-10
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
D VL L +ED LERRLQT VF+ GLA++ AR LI HI V +VV PS++V ++
Sbjct: 92 DDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEE 151
Query: 503 KHIDFSLKSPFG-GGRPGRVK 562
I ++ SPF P R K
Sbjct: 152 DKISYAKNSPFNDDNHPERAK 172
Score = 58.0 bits (134), Expect = 1e-07
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +3
Query: 63 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 224
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS 61
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 65.7 bits (153), Expect = 7e-10
Identities = 34/60 (56%), Positives = 37/60 (61%)
Frame = -3
Query: 558 TRPGRPPPNGDFREKSMCLPESRRTMNEGMFTTCLRTRICLCLIKMRA*WIDFARPALNT 379
TRPGRPPP+G+ KSMC S RT G FT CL TRI IK RA D ARP+L T
Sbjct: 50 TRPGRPPPSGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKT 109
Score = 50.0 bits (114), Expect = 4e-05
Identities = 25/61 (40%), Positives = 40/61 (65%)
Frame = -1
Query: 266 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETILSDDLQLLIKTRLLERTS 87
S+ + +LR+LL++ +Q + + + L AP +LVA+ L+DDLQL ++ LLERTS
Sbjct: 136 SLTLEDALRVLLIKRKQHASGVAELVKGELHAPQLSLVAKAELTDDLQLGVEAILLERTS 195
Query: 86 R 84
R
Sbjct: 196 R 196
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 64.5 bits (150), Expect = 2e-09
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +3
Query: 54 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 218
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYL 58
Score = 50.4 bits (115), Expect = 3e-05
Identities = 30/70 (42%), Positives = 37/70 (52%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
D VL L +E+ L+RRLQT VFK LA S AR LI HI V + V +P +V
Sbjct: 93 DDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQYE 152
Query: 503 KHIDFSLKSP 532
I + SP
Sbjct: 153 DTIAYYENSP 162
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 62.1 bits (144), Expect = 9e-09
Identities = 34/71 (47%), Positives = 44/71 (61%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
D +LGL E++LERRLQT V+K GLA++I+ AR LI HI + + V P +IV
Sbjct: 91 DDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEE 150
Query: 503 KHIDFSLKSPF 535
IDF SPF
Sbjct: 151 DLIDFYPTSPF 161
Score = 48.8 bits (111), Expect = 9e-05
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +3
Query: 54 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 227
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLAL 61
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 5e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +3
Query: 165 VWRVKYTLARIRKAARELLTLEEKDPKRLF 254
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 59.7 bits (138), Expect = 5e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +3
Query: 54 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 221
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
Score = 59.3 bits (137), Expect = 6e-08
Identities = 30/72 (41%), Positives = 41/72 (56%)
Frame = +2
Query: 317 NWDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 496
N D +L LK E+ LERRLQTQV + GLA+++ AR I HI + + IP +V +
Sbjct: 97 NVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKE 156
Query: 497 SGKHIDFSLKSP 532
HI + SP
Sbjct: 157 DEMHIGYYGSSP 168
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 59.3 bits (137), Expect = 6e-08
Identities = 31/70 (44%), Positives = 44/70 (62%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
D VL L ++D LERRLQT + + GLAK++ AR I HI V +VV+ PS++V+ +
Sbjct: 89 DDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEE 148
Query: 503 KHIDFSLKSP 532
I+F SP
Sbjct: 149 DKIEFVPFSP 158
Score = 41.5 bits (93), Expect = 0.013
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +3
Query: 84 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 233
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQ 59
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 58.4 bits (135), Expect = 1e-07
Identities = 29/55 (52%), Positives = 36/55 (65%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 487
D +L L + LERRLQT V++ GLAKSIHHAR LI H+ V + V P F+V
Sbjct: 93 DRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147
Score = 50.4 bits (115), Expect = 3e-05
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Frame = +3
Query: 84 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDP 242
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAP 70
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 58.0 bits (134), Expect = 1e-07
Identities = 30/75 (40%), Positives = 48/75 (64%)
Frame = -2
Query: 556 ATGPAAAERRLQREVNVLAGVQADDERRNVHHLLADTNMPLSDQDAGMMD*LRKTSLEHL 377
+T + E R EVNVL Q+D ER +V LL ++N+ L DQD+ +++ L +T L L
Sbjct: 21 STWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDL 80
Query: 376 SLKTALQEVLNLQTE 332
L+++ QE+ NLQ++
Sbjct: 81 GLQSSFQEIFNLQSQ 95
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 57.6 bits (133), Expect = 2e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +3
Query: 54 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 221
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALL 59
Score = 52.4 bits (120), Expect = 7e-06
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +2
Query: 329 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 508
VL LK++D +ERRLQT +++ G A SI AR I HI + + + +P ++V
Sbjct: 99 VLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYLVLKSEEDM 158
Query: 509 IDFSLKSP 532
+ + + SP
Sbjct: 159 LSYYVGSP 166
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 55.6 bits (128), Expect = 8e-07
Identities = 31/70 (44%), Positives = 39/70 (55%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
D VL L +E LERRLQT VF+ GLA + AR I HI V + +N PS++V L
Sbjct: 91 DDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVEE 150
Query: 503 KHIDFSLKSP 532
I + SP
Sbjct: 151 DAISYMPNSP 160
Score = 54.4 bits (125), Expect = 2e-06
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +3
Query: 54 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 224
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLIS 60
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 52.8 bits (121), Expect = 5e-06
Identities = 26/38 (68%), Positives = 29/38 (76%)
Frame = +2
Query: 449 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVK 562
V +Q+VNIPSFIVRL+S KHI FSL SP GG RVK
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVK 64
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 52.4 bits (120), Expect = 7e-06
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = +2
Query: 329 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 508
VL L +ED L RRLQ+ VFK GL+ + AR+ + HI + + +N P +V ++
Sbjct: 92 VLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEEN 151
Query: 509 IDF 517
IDF
Sbjct: 152 IDF 154
Score = 49.2 bits (112), Expect = 7e-05
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +3
Query: 69 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 230
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMD 62
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 52.4 bits (120), Expect = 7e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +3
Query: 54 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 233
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 234 KDPKR 248
+ +R
Sbjct: 64 EVRER 68
Score = 41.9 bits (94), Expect = 0.010
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
D VL L++ D L RRLQT V K + + AR + HI + +VV IPS+ V ++
Sbjct: 90 DDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTVYVEEE 149
Query: 503 KHIDFSLKSPF 535
I + S F
Sbjct: 150 GDIKLTGGSAF 160
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 52.0 bits (119), Expect = 9e-06
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +3
Query: 51 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 221
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL 59
Score = 47.6 bits (108), Expect = 2e-04
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
D VL L++ D LERRLQT V++ GLA ++ AR + H+ V V PS+ V +
Sbjct: 87 DDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEE 146
Query: 503 KHIDF 517
+ F
Sbjct: 147 NTLAF 151
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 50.4 bits (115), Expect = 3e-05
Identities = 29/61 (47%), Positives = 37/61 (60%)
Frame = +2
Query: 305 ENR*NWDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 484
EN + VL + FLERRLQT VFK GLA++I AR LI I V + V+IP ++
Sbjct: 82 ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMKRVSIPGYM 141
Query: 485 V 487
V
Sbjct: 142 V 142
Score = 40.3 bits (90), Expect = 0.030
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 69 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 224
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLS 60
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 48.8 bits (111), Expect = 9e-05
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +2
Query: 473 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVK 562
PSF+VR+DS K D SL SP GGGRPGRVK
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVK 53
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 48.4 bits (110), Expect = 1e-04
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSI 409
DYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 24 DYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 48.4 bits (110), Expect = 1e-04
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 514
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
Query: 515 FSLKS 529
+S
Sbjct: 143 IKPES 147
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +3
Query: 63 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 221
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 47.2 bits (107), Expect = 3e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +2
Query: 332 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 490
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 46.8 bits (106), Expect = 3e-04
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +2
Query: 329 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 493
V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI SF V++
Sbjct: 77 VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKV 131
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 5e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +2
Query: 329 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 481
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/72 (37%), Positives = 38/72 (52%)
Frame = +2
Query: 329 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 508
V G + LERRL VF+AG A S AR ++R +HI + + V+IPS+ ++ G
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY--QVSEGDV 145
Query: 509 IDFSLKSPFGGG 544
I KS G
Sbjct: 146 ISLREKSRANAG 157
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = +2
Query: 329 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 508
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 509 IDFSLKS 529
I+F KS
Sbjct: 140 IEFRQKS 146
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 44.0 bits (99), Expect = 0.002
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 490
G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++ +
Sbjct: 101 GQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMCK 152
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 43.2 bits (97), Expect = 0.004
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 514
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V + G I+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIE 146
Query: 515 FSLKS 529
KS
Sbjct: 147 IKEKS 151
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 42.7 bits (96), Expect = 0.006
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 490
G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++V+
Sbjct: 62 GENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVK 113
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 42.3 bits (95), Expect = 0.008
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +2
Query: 356 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 529
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.5 bits (93), Expect = 0.013
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 481
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 40.7 bits (91), Expect = 0.023
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 514
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 515 FSLKS 529
KS
Sbjct: 142 LRDKS 146
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 40.7 bits (91), Expect = 0.023
Identities = 22/42 (52%), Positives = 27/42 (64%)
Frame = +2
Query: 356 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 481
LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 91 LEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 40.3 bits (90), Expect = 0.030
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +2
Query: 329 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 490
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 39.9 bits (89), Expect = 0.040
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 356 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 493
LERRL V++ G A + AR L+ HI V + NIPS+ VR+
Sbjct: 92 LERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYTVRV 137
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 39.9 bits (89), Expect = 0.040
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 481
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.040
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 350 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 493
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 39.9 bits (89), Expect = 0.040
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 481
GL + LE RL VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 83 GLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 39.9 bits (89), Expect = 0.040
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 514
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 515 F 517
F
Sbjct: 147 F 147
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 39.5 bits (88), Expect = 0.053
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +2
Query: 356 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 481
LE RL +F G+A +I AR L+ RHI V +V+IPS+
Sbjct: 54 LEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSY 95
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 38.7 bits (86), Expect = 0.093
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 326 YVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 484
+ +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 198 WAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.093
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 481
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 38.3 bits (85), Expect = 0.12
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +2
Query: 329 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 490
V G + LE RL V++ G A + AR L+ HIR+ + NIPS+ VR
Sbjct: 85 VTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYSVR 138
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.16
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +2
Query: 356 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 490
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.16
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 481
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.5 bits (83), Expect = 0.21
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 487
G + + LE RL V +AG A++I AR L+ RHI V V+ PSF V
Sbjct: 86 GENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFRV 136
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.1 bits (82), Expect = 0.28
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 356 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 490
LE RL V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 0.28
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 329 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 490
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 37.1 bits (82), Expect = 0.28
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2
Query: 356 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 487
+E RL +F+ G AKSI+ AR LI I + +V PSFI+
Sbjct: 83 IELRLDATIFRLGFAKSINQARQLITHGFIFINSILVKKPSFIL 126
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 36.7 bits (81), Expect = 0.37
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +2
Query: 329 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 490
V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V+
Sbjct: 77 VTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRVK 130
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 36.3 bits (80), Expect = 0.49
Identities = 11/46 (23%), Positives = 30/46 (65%)
Frame = +2
Query: 356 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 493
LE+R+ + ++G +S++ AR +I +H+ V ++ ++P +++ +
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINV 189
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 36.3 bits (80), Expect = 0.49
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 320 WDYVLGLKIE--DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 487
WD KI F RRL + + +++++ HA +I H+RV VV P+F+V
Sbjct: 92 WDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVKDPAFLV 149
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 36.3 bits (80), Expect = 0.49
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2
Query: 353 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFS 520
F RRL T + + + + A I Q HIRV VVNIP++ V + HI ++
Sbjct: 116 FCRRRLATVLVQRKFCEHLKQAVTYIEQGHIRVGLDVVNIPAYHVTRELEDHITWA 171
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 36.3 bits (80), Expect = 0.49
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 490
G + LERRL V++A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 36.3 bits (80), Expect = 0.49
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +2
Query: 356 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 487
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQV 133
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.3 bits (80), Expect = 0.49
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2
Query: 356 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 481
LE RL VF+ +A +I AR LI HI + K+ V IPS+
Sbjct: 109 LEMRLDNIVFRLHMAPTIKAARQLISHGHILINKKKVTIPSY 150
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 35.9 bits (79), Expect = 0.65
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 329 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 499
+L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L S
Sbjct: 86 ILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISLGS 142
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 35.9 bits (79), Expect = 0.65
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 481
G ++ LE RL V++ G A S AR +R H++V + V+IPS+
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 35.5 bits (78), Expect = 0.86
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 350 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 493
+ LE+RL VF+ G A SI AR L+ + V + VNI S I+++
Sbjct: 91 NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKKVNIGSQIIKV 138
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 35.5 bits (78), Expect = 0.86
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 481
GL + LE RL V++AG A ++ AR L+ H++V + V I S+
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 35.5 bits (78), Expect = 0.86
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 353 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 487
F RRL T + K +A+ + A + Q H+RV VV P+F+V
Sbjct: 106 FCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLV 150
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.5
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 335 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 481
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 1.5
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 338 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 517
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 518 S 520
+
Sbjct: 135 A 135
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 34.7 bits (76), Expect = 1.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 132 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 248
I +YGLR++ E + + ++RK A L L+E DP R
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVR 70
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 34.7 bits (76), Expect = 1.5
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 353 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 529
F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 34.3 bits (75), Expect = 2.0
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +2
Query: 434 QRHIRVRKQVVNIPSFI-----VRLDSGKHIDFSLKSPFGGGRPGRVK 562
+R R R+ + IP + VR++ K IDFS GGGRPGRVK
Sbjct: 130 ERRYRGRRAFLVIPRVMGAPLSVRVEPQKLIDFSNTCLLGGGRPGRVK 177
>UniRef50_Q6MYA2 Cluster: Zinc finger protein, putative; n=2;
Aspergillus fumigatus|Rep: Zinc finger protein, putative
- Aspergillus fumigatus (Sartorya fumigata)
Length = 1650
Score = 34.3 bits (75), Expect = 2.0
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -2
Query: 544 AAAERRLQREVNVLAGVQADDERRNVHHLLADTNMPLSD 428
A AER E +VLA V + R +V ++L+ TN+PL D
Sbjct: 519 AQAERLFALEASVLASVADSEARASVSNILSKTNLPLLD 557
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 34.3 bits (75), Expect = 2.0
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 356 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 517
+E+RL ++++G K+I AR R I V +V IPS I L+SG I +
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISY 251
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 34.3 bits (75), Expect = 2.0
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = +2
Query: 356 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 529
LERRL V++A A +I AR L+ HIRV NI S R++ G I K+
Sbjct: 92 LERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS--RRVNPGDEISLGSKA 147
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 2.6
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +2
Query: 344 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 505
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 33.5 bits (73), Expect = 3.5
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 350 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 487
DF RRL V + + A LI+Q HI+V V+ P++IV
Sbjct: 105 DFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPDVIRNPAYIV 150
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 33.5 bits (73), Expect = 3.5
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 99 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL 251
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL 665
>UniRef50_Q8IQ18 Cluster: CG33196-PB; n=10; Endopterygota|Rep:
CG33196-PB - Drosophila melanogaster (Fruit fly)
Length = 23015
Score = 33.1 bits (72), Expect = 4.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 349 GLLGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSC 450
GL G P+S G G+ C+V+ CP+ Y C
Sbjct: 9018 GLSGDPTSVIGCHGYECQVDADCPNSKACMGYRC 9051
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 33.1 bits (72), Expect = 4.6
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +2
Query: 356 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 487
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ ++
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_UPI0000E4A709 Cluster: PREDICTED: similar to EGF-like
protein; n=5; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to EGF-like protein -
Strongylocentrotus purpuratus
Length = 1686
Score = 32.3 bits (70), Expect = 8.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 370 SDSGVQGWSCEVNPSCPHLDQTEAYSCPQAGGE 468
SDSG C+V S P DQ +YS P GG+
Sbjct: 968 SDSGQASCLCDVGFSGPTCDQVSSYSIPMFGGD 1000
>UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 157
Score = 32.3 bits (70), Expect = 8.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 362 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 487
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1;
Methanosaeta thermophila PT|Rep: Thiamine biosynthesis
protein - Methanosaeta thermophila (strain DSM 6194 /
PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 335
Score = 32.3 bits (70), Expect = 8.1
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 24 ELAKMVNNRVPSVFSKTY-VTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR 200
ELA+ + S+ S+ P++P +ARL++ L+I GE GLR+ + RIR
Sbjct: 275 ELARRIGTYDISIGSQQCRAAPKKPVTRARLEEILRIEGELGLRDLAMELADGVEIVRIR 334
Query: 201 K 203
+
Sbjct: 335 R 335
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,734,733
Number of Sequences: 1657284
Number of extensions: 11267694
Number of successful extensions: 31730
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 30685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31719
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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