Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G22
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   145   5e-36
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   144   6e-36
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    30   0.27 
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    29   0.62 
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    25   7.7  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.7  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  145 bits (351), Expect = 5e-36
 Identities = 67/86 (77%), Positives = 76/86 (88%)
 Frame = +2

Query: 305 ENR*NWDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 484
           E+R   DYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+
Sbjct: 88  ESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFV 147

Query: 485 VRLDSGKHIDFSLKSPFGGGRPGRVK 562
           VRLD+ KHIDF+L SP+GGGRPGR K
Sbjct: 148 VRLDAQKHIDFALSSPYGGGRPGRCK 173



 Score =  117 bits (282), Expect = 1e-27
 Identities = 54/71 (76%), Positives = 60/71 (84%)
 Frame = +3

Query: 54  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 233
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 234 KDPKRLFEGNA 266
           KDPKRLFEGNA
Sbjct: 65  KDPKRLFEGNA 75


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  144 bits (350), Expect = 6e-36
 Identities = 67/86 (77%), Positives = 75/86 (87%)
 Frame = +2

Query: 305 ENR*NWDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 484
           E R   DYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+
Sbjct: 88  ETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFV 147

Query: 485 VRLDSGKHIDFSLKSPFGGGRPGRVK 562
           VRLD+ KHIDF+L SP+GGGRPGR K
Sbjct: 148 VRLDTQKHIDFALSSPYGGGRPGRCK 173



 Score =  117 bits (282), Expect = 1e-27
 Identities = 54/71 (76%), Positives = 60/71 (84%)
 Frame = +3

Query: 54  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 233
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 234 KDPKRLFEGNA 266
           KDPKRLFEGNA
Sbjct: 65  KDPKRLFEGNA 75


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 362 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 487
           RRL   + K  +++ +  A  LI Q H+RV   V+  P+++V
Sbjct: 109 RRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLV 150


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 266 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETIL 138
           SI F+ S RIL     Q T  LT  S     + HF ++  TIL
Sbjct: 18  SIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTIL 60


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 376 SGVQGWSCEVNPSCP 420
           +G++GWS EV+P+ P
Sbjct: 385 AGLKGWSTEVDPNFP 399


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 27  LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 185
           ++K VN      FS +    +R  + A +D   + + E   RN++   +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,016
Number of Sequences: 5004
Number of extensions: 43494
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)